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Document workflow of tool with not-just-microbiome datasets #267

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fedarko opened this issue Feb 12, 2020 · 1 comment
Closed
2 tasks done

Document workflow of tool with not-just-microbiome datasets #267

fedarko opened this issue Feb 12, 2020 · 1 comment
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docs README, tutorials, demos, etc.
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fedarko commented Feb 12, 2020

I imagine this would work best as a separate tutorial (analogous to the moving pictures one), but using Qurro standalone instead of through QIIME 2. Depending on where we get the data from, we could cover:

  1. Wrangling arbitrary data into the types accepted by Qurro (BIOM table, tab-separated metadata files, ALDEx2 / DEseq2 / ... output)
  2. Running Qurro
  3. Interpreting results (e.g. what columns in the ALDEx2 / DEseq2 / ... output should be used in the visualization) -- likely ties in with If an "Intercept" column exists, don't start in it by default #229

Update: progress --

@fedarko fedarko added the docs README, tutorials, demos, etc. label Feb 12, 2020
@fedarko fedarko added this to the v0.6.0 milestone Feb 12, 2020
@fedarko fedarko changed the title Document workflow of tool with RNA-seq datasets Document workflow of tool with not-just-microbiome datasets Feb 14, 2020
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fedarko commented Mar 6, 2020

closed now that #282 merged in

@fedarko fedarko closed this as completed Mar 6, 2020
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