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Conda Forge edlib vs Bioconda edlib #37646

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mfansler opened this issue Oct 26, 2022 · 0 comments
Open

Conda Forge edlib vs Bioconda edlib #37646

mfansler opened this issue Oct 26, 2022 · 0 comments

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@mfansler
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Conda Forge added the PyPI package edlib in the last year as edlib. However, Bioconda provided edlib as the C/C++ library and uses python-edlib for the PyPI package. This means the edlib C/C++ library is now masked by Conda Forge, and bioconda::python-edlib clobbers with conda-forge::edlib. To complicate matters, the bioconda::edlib recipe has been removed.

This impacts multiple recipes (e.g., ultra_bioinformatics, svanalyzer, circle-map).

Not sure what the best solution would be, but one option might be to re-add the C++ library as libedlib, remove bioconda::python-edlib, and then replace edlib -> libedlib and python-edlib -> edlib in recipes, possibly with version constraints.

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