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Several bowtie versions don't install properly #32718

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NickSto opened this issue Feb 2, 2022 · 2 comments
Open

Several bowtie versions don't install properly #32718

NickSto opened this issue Feb 2, 2022 · 2 comments
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@NickSto
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NickSto commented Feb 2, 2022

I'm finding that all bowtie 1.2.* versions will look like they install successfully, but fail when I try to execute, giving this error:

$ bowtie --version
bowtie-align: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory

Steps to reproduce

conda create -y -n test
conda install -y -n test bowtie=1.2.1.1
conda activate test
bowtie --version

Environment

$ conda info

     active environment : None
            shell level : 0
       user config file : /home/me/.condarc
 populated config files : /home/me/.condarc
          conda version : 4.11.0
    conda-build version : 3.21.7
         python version : 3.9.10.final.0
       virtual packages : __linux=5.10.0=0
                          __glibc=2.31=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/me/src/installations/miniconda3  (writable)
      conda av data dir : /home/me/src/installations/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/me/src/installations/miniconda3/pkgs
                          /home/me/.conda/pkgs
       envs directories : /home/me/src/installations/miniconda3/envs
                          /home/me/.conda/envs
               platform : linux-64
             user-agent : conda/4.11.0 requests/2.27.1 CPython/3.9.10 Linux/5.10.0-1055-oem ubuntu/20.04.3 glibc/2.31
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

@NickSto NickSto added the bug label Feb 2, 2022
@bgruening
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You could rebuild those old builds or install an older version of tbb into your environment.

@NickSto
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NickSto commented Feb 2, 2022

So is this just an issue with my system?

I'm running into this while trying to build a new version of my tool (dunovo), which depends on bowtie. I'd like it to run on my system so I can test it, but it needs to work for everyone else too.

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