From e2b5547a42e1a5e351659a894ead18c39b624f0e Mon Sep 17 00:00:00 2001
From: Darian <46600008+DarianHole@users.noreply.github.com>
Date: Fri, 1 May 2020 08:39:46 -0500
Subject: [PATCH] [ci skip] Merge PR 21851

Merge PR #21851, commits were:
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of github.com:bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/phac-nml/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge pull request #4 from phac-nml/update-rgi

Update rgi
 * Revert "line fix in bootstrap.py"

This reverts commit 5ac1ecd0142a5cfdfc8499c5b6ef4e1f629cd046.
 * move build script into meta.yaml
 * add preprocessing selector to skip python 2.7
 * change python & matplotlib versions; add build.sh file
 * line fix in bootstrap.py
 * remove older recipes
 * move build script into meta
 * fix build
 * update meta and build
 * testing circleci
 * change build number
 * change source to github
 * update dependencies list
 * first commit
---
 recipes/pangolin/meta.yaml | 44 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 recipes/pangolin/meta.yaml

diff --git a/recipes/pangolin/meta.yaml b/recipes/pangolin/meta.yaml
new file mode 100644
index 0000000000000..834a1014a48ff
--- /dev/null
+++ b/recipes/pangolin/meta.yaml
@@ -0,0 +1,44 @@
+{% set version = "1.1" %}
+
+package:
+  name: pangolin
+  version: {{ version }}
+
+source:
+  - url: https://github.com/hCoV-2019/pangolin/archive/v{{ version }}.tar.gz
+    sha256: cdd88a06d74be86d90c7775bcbf1aa837c505ad750200979b4e47c27e9f7e70e
+    folder: pangolin
+  - url: https://github.com/hCoV-2019/lineages/archive/2020-04-27.tar.gz
+    sha256: 0a998177c5395386e4d18a215c37db7a9af03d55f110ed319c94810ff7f86522
+    folder: lineages
+
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install ./pangolin/. --no-deps -vv && {{ PYTHON }} -m pip install ./lineages/. --no-deps -vv
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python >=3.6
+    - pip
+    - biopython
+    - iqtree =1.6.12
+    - mafft
+    - snakemake-minimal
+    - pytools
+    - dendropy >=4.4.0
+
+test:
+  commands:
+    - pangolin -h
+    - pangolin -lv
+
+about:
+  home: https://github.com/hCoV-2019/pangolin
+  license: GPL-3.0
+  license_file: pangolin/LICENSE.txt
+  summary: Phylogenetic Assignment of Named Global Outbreak LINeages
\ No newline at end of file