From d4913940a0bf9db9533d21e62d7671f40985d3af Mon Sep 17 00:00:00 2001
From: biocodz <biocodz@protonmail.com>
Date: Thu, 27 Jun 2024 10:38:51 -0300
Subject: [PATCH] sortmerna recipe relocating to conda-forge (#48607)

* sortmerna-4.3.2 release

* sortmerna-4.3.3 release

* sortmerna 4.3.4 release

* sortmerna version 4.3.6

* sortmerna recipe removed - relocating to conda-forge
---
 recipes/sortmerna/build.sh  | 13 ---------
 recipes/sortmerna/meta.yaml | 57 -------------------------------------
 2 files changed, 70 deletions(-)
 delete mode 100644 recipes/sortmerna/build.sh
 delete mode 100644 recipes/sortmerna/meta.yaml

diff --git a/recipes/sortmerna/build.sh b/recipes/sortmerna/build.sh
deleted file mode 100644
index 93056bab6b458..0000000000000
--- a/recipes/sortmerna/build.sh
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/bash -xe
-
-mkdir -p ${PREFIX}/bin
-
-if [[ "$(uname)" == "Darwin" ]]; then
-    chmod 0755 sortmerna-Darwin/bin/sortmerna
-    cp -f sortmerna-Darwin/bin/sortmerna "${PREFIX}/bin"
-else
-    cd sortmerna
-    python setup.py -n all
-    chmod 0755 dist/bin/sortmerna
-    cp -f dist/bin/sortmerna "${PREFIX}/bin"
-fi
diff --git a/recipes/sortmerna/meta.yaml b/recipes/sortmerna/meta.yaml
deleted file mode 100644
index 1a4a425629e12..0000000000000
--- a/recipes/sortmerna/meta.yaml
+++ /dev/null
@@ -1,57 +0,0 @@
-{% set name = "sortmerna" %}
-{% set version = "4.3.7" %}
-{% set sha256 = "6b62def30704ea956e1de060b602f9bebc8f2ba68107c59329b332500997b1d2" %}
-
-package:
-  name: {{ name }}
-  version: {{ version }}
-
-source:
-- url: https://github.com/sortmerna/sortmerna/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: {{ sha256 }}
-  folder: sortmerna
-- url: https://github.com/sortmerna/sortmerna/releases/download/v{{ version }}/sortmerna-{{ version }}-Darwin.tar.gz  # [osx and x86_64]
-  sha256: f92e4b1e8f2db9b5027170b63cdb0f5847e67f7c44c83689d98802eec1f05d4a  # [osx and x86_64]
-  folder: sortmerna-Darwin  # [osx and x86_64]
-
-build:
-  number: 1
-  run_exports:
-    - {{ pin_subpackage(name, max_pin='x') }}
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-    - cmake
-    - ninja
-  host:
-    - pyyaml
-    - jinja2
-    - requests
-  run:
-    - pyyaml
-    - jinja2
-    - requests
-
-test:
-  commands:
-  - sortmerna --version
-  - sortmerna -h
-
-about:
-  home: "https://github.com/sortmerna/sortmerna"
-  license: "LGPL-3.0-only"
-  license_family: LGPL
-  license_file: "sortmerna/LICENSE.LESSER.txt"
-  summary: "SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads."
-  dev_url: "https://github.com/sortmerna/sortmerna"
-  doc_url: "https://sortmerna.readthedocs.io"
-
-extra:
-  additional-platforms:
-    - linux-aarch64
-  identifiers:
-    - biotools:sortmerna
-    - doi:10.1093/bioinformatics/bts611
-    - usegalaxy-eu:bg_sortmerna