From 01b0584bd08177317ddd5b1e78fed97cef5ce0fa Mon Sep 17 00:00:00 2001
From: cjw85 <chris.wright@nanoporetech.com>
Date: Tue, 26 Feb 2019 23:51:01 +0000
Subject: [PATCH] bump medaka version (#13810)

* Update medaka to v0.6.0
---
 recipes/medaka/meta.yaml | 19 ++++++-------------
 1 file changed, 6 insertions(+), 13 deletions(-)

diff --git a/recipes/medaka/meta.yaml b/recipes/medaka/meta.yaml
index b8a19f5252122..820c4c09f1ddd 100644
--- a/recipes/medaka/meta.yaml
+++ b/recipes/medaka/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "medaka" %}
-{% set version = "0.5.2" %}
+{% set version = "0.6.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6
+  sha256: 45bc0299c284721925f6d77de406758b208b22a8fb04382ce294682b46a8d3ae
 
 build:
   # keras is 2.7 or 3.6 only. We need py3: 3.6 is the only possibility
@@ -21,17 +21,10 @@ build:
 
 requirements:
   host:
-    - biopython
     - cffi
-    - h5py ==2.7.1
-    - intervaltree >=3.0.0
-    - keras ==2.2.4
-    - numpy ==1.16.1
     - pip
-    - pysam
     - python
-    - tensorflow ==1.12.0
-    - htslib ==1.3.1
+    - htslib ==1.9
     - bzip2
     - xz
     - zlib
@@ -48,10 +41,10 @@ requirements:
     - pysam
     - python
     - tensorflow ==1.12.0
-    - samtools ==1.3.1
-    - bcftools ==1.3.1
+    - samtools ==1.9
+    - bcftools ==1.9
     - minimap2 ==2.11
-    - htslib ==1.3.1
+    - htslib ==1.9
     - bzip2
     - xz
     - zlib