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build_failure.linux-64.yaml
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build_failure.linux-64.yaml
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recipe_sha: 89d6a965f4a9b74d87364eade30096aa1b7c2a66a546356f7a99730acf50cf71 # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
category: compiler error
log: |2-
6:03:41 BIOCONDA INFO (OUT) Error compiling Cython file:
16:03:41 BIOCONDA INFO (OUT) ------------------------------------------------------------
16:03:41 BIOCONDA INFO (OUT) ...
16:03:41 BIOCONDA INFO (OUT) if self.in_edge_count[i] == 0:
16:03:41 BIOCONDA INFO (OUT) merge_count += 1
16:03:41 BIOCONDA INFO (OUT) self.graph.remove_node( prestates[i] )
16:03:41 BIOCONDA INFO (OUT)
16:03:41 BIOCONDA INFO (OUT) if verbose:
16:03:41 BIOCONDA INFO (OUT) print "Orphan state {} removed due to no edges \
16:03:41 BIOCONDA INFO (OUT) ^
16:03:41 BIOCONDA INFO (OUT) ------------------------------------------------------------
16:03:41 BIOCONDA INFO (OUT)
16:03:41 BIOCONDA INFO (OUT) yahmm/yahmm.pyx:2348:12: Syntax error in simple statement list
16:03:41 BIOCONDA INFO (OUT) Traceback (most recent call last):
16:03:41 BIOCONDA INFO (OUT) File "<string>", line 2, in <module>
16:03:41 BIOCONDA INFO (OUT) File "<pip-setuptools-caller>", line 34, in <module>
16:03:41 BIOCONDA INFO (OUT) File "/opt/conda/conda-bld/yahmm_1718121715058/work/setup.py", line 24, in <module>
cmd_obj.run()
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/command/build.py", line 132, in run
self.run_command(cmd_name)
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/dist.py", line 968, in run_command
super().run_command(command)
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 359, in run
self.build_extensions()
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 479, in build_extensions
self._build_extensions_serial()
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 505, in _build_extensions_serial
self.build_extension(ext)
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/Cython/Distutils/build_ext.py", line 130, in build_extension
new_ext = cythonize(
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
cythonize_one(*args)
File "/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: yahmm/yahmm.pyx
[1;31merror[0m: [1msubprocess-exited-with-error[0m
[31m[0m [32mpython setup.py bdist_wheel[0m did not run successfully.
[31m[0m exit code: [1;36m1[0m
[31m>[0m See above for output.
[1;35mnote[0m: This error originates from a subprocess, and is likely not a problem with pip.
[1;35mfull command[0m: [34m/opt/conda/conda-bld/yahmm_1718121715058/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/bin/python -u -c '[0m
[34m exec(compile('"'"''"'"''"'"'[0m
[34m # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py[0m
[34m #[0m
[34m # - It imports setuptools before invoking setup.py, to enable projects that directly[0m
[34m # import from distutils.core to work with newer packaging standards.[0m
[34m # - It provides a clear error message when setuptools is not installed.[0m
[34m # - It sets sys.argv[0] to the underlying setup.py, when invoking setup.py so[0m
[34m # setuptools doesn'"'"'t think the script is -c. This avoids the following warning:[0m
[34m # manifest_maker: standard file '"'"'-c'"'"' not found".[0m
[34m # - It generates a shim setup.py, for handling setup.cfg-only projects.[0m
[34m import os, sys, tokenize[0m
[34m [0m
[34m try:[0m
[34m import setuptools[0m
[34m except ImportError as error:[0m
[34m print([0m
[34m "ERROR: Can not execute setup.py since setuptools is not available in "[0m
[34m "the build environment.",[0m
[34m file=sys.stderr,[0m
[34m )[0m
[34m sys.exit(1)[0m
[34m [0m
[34m __file__ = %r[0m
[34m sys.argv[0] = __file__[0m
[34m [0m
[34m if os.path.exists(__file__):[0m
[34m filename = __file__[0m
[34m with tokenize.open(__file__) as f:[0m
[34m setup_py_code = f.read()[0m
[34m else:[0m
[34m filename = "<auto-generated setuptools caller>"[0m
[34m setup_py_code = "from setuptools import setup; setup()"[0m
[34m [0m
[34m exec(compile(setup_py_code, filename, "exec"))[0m
[34m '"'"''"'"''"'"' % ('"'"'/opt/conda/conda-bld/yahmm_1718121715058/work/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-72fnr0kj[0m
[1;35mcwd[0m: /opt/conda/conda-bld/yahmm_1718121715058/work/
Building wheel for yahmm (setup.py): finished with status 'error'
[31m ERROR: Failed building wheel for yahmm[0m[31m
[0m Running setup.py clean for yahmm
Running command python setup.py clean
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
Failed to build yahmm
[31mERROR: Could not build wheels for yahmm, which is required to install pyproject.toml-based projects[0m[31m
[0mException information:
Traceback (most recent call last):
File "$PREFIX/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
status = run_func(*args)
File "$PREFIX/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper
return func(self, options, args)
File "$PREFIX/lib/python3.8/site-packages/pip/_internal/commands/install.py", line 429, in run
raise InstallationError(
pip._internal.exceptions.InstallationError: Could not build wheels for yahmm, which is required to install pyproject.toml-based projects
Removed build tracker: '/tmp/pip-build-tracker-dk6gx091'
Traceback (most recent call last):
File "/opt/conda/bin/conda-build", line 11, in <module>
sys.exit(execute())
File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 590, in execute
api.build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build
return build_tree(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree
packages_from_this = build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2506, in build
utils.check_call_env(
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 405, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 381, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/yahmm_1718121715058/work/conda_build.sh']' returned non-zero exit status 1.
# Last 100 lines of the build log.