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Running partial workflow

Status: Open.

#121 In biobakery/phylophlan;

· AroneyS opened on Jan 17, 2024

Trouble running example 2 - Tree of Life

Status: Open.

#120 In biobakery/phylophlan;

· sierra-smith opened on Dec 1, 2023

The generated phylogenetic tree is missing MAGs at the leaf nodes.

Status: Open.

#119 In biobakery/phylophlan;

· ylei14 opened on Nov 25, 2023

broken link on wiki

Status: Open.

#118 In biobakery/phylophlan;

· jorondo1 opened on Nov 16, 2023

Reducing number of RAxML threads to 20, as it appears to underperform with more threads

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#117 In biobakery/phylophlan;

· ylei14 opened on Nov 11, 2023

What is the difference between "phylophlan" database and "SGB.XXX"?

Status: Open.

#116 In biobakery/phylophlan;

· augfranco93 opened on Oct 3, 2023

[e] gene_markers_identification crashed

Status: Open.

#115 In biobakery/phylophlan;

· kaw97 opened on Sep 19, 2023

RAxML can't parse alignments for which there are sequences made entirely of undetermined characters

Status: Open.

#113 In biobakery/phylophlan;

· RyanCook94 opened on Jun 30, 2023

UnboundLocalError: cannot access local variable 'uniprotkb2uniref90' where it is not associated with a value

Status: Open.

#111 In biobakery/phylophlan;

· chennyhui opened on May 28, 2023

Mapping with Diamond v2 seems slow

Status: Open.

#110 In biobakery/phylophlan;

· ganiatgithub opened on May 23, 2023

maybee update taxa2core_cpa* to recent uniprot release

Status: Open.

#109 In biobakery/phylophlan;

· EricDeveaud opened on May 11, 2023

[e] No alignments found to concatenate

Status: Open.

#104 In biobakery/phylophlan;

· jwkkang opened on Feb 24, 2023