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daichengxindaichengxin
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add a mandatory column
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‎testdata/lfq_ci_phospho/test_phospho.sdrf‎

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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[disease] characteristics[pool] characteristics[enrichment process] characteristics[ancestry category] characteristics[age] characteristics[developmental stage] characteristics[sex] assay name comment[technical replicate] comment[fraction identifier] comment[label] comment[data file] comment[file uri] comment[instrument] comment[cleavage agent details] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[fragment mass tolerance] comment[precursor mass tolerance] factor value[pool]
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Sample 1 Homo sapiens Epithelial cell Epithelial cell Bone osteosarcoma 1 enrichment of phosphorylated Protein not available not available not available not available run 2 1 1 AC=MS:1002038;NT=label free sample SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep1.raw https://abibuilder.cs.uni-tuebingen.de/archive/openms/Tutorials/Data/PhosphoID_nfcore_testdata/SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep1.raw NT=Orbitrap Fusion ETD;AC=MS:1002417 NT=Trypsin;AC=MS:1001251 NT=Phospho;TA=S,T,Y;AC=UNIMOD:21;MT=variable NT=Oxidation;TA=M;AC=UNIMOD:35;MT=variable NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Deamidated;TA=N,Q;AC=UNIMOD:7;MT=variable NT=Acetyl;TA=N-term;AC=UNIMOD:1;MT=variable 0.6 Da 10 ppm 1
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Sample 2 Homo sapiens Epithelial cell Epithelial cell Bone osteosarcoma 2 enrichment of phosphorylated Protein not available not available not available not available run 4 1 1 AC=MS:1002038;NT=label free sample SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep2.raw https://abibuilder.cs.uni-tuebingen.de/archive/openms/Tutorials/Data/PhosphoID_nfcore_testdata/SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep2.raw NT=Orbitrap Fusion ETD;AC=MS:1002417 NT=Trypsin;AC=MS:1001251 NT=Phospho;TA=S,T,Y;AC=UNIMOD:21;MT=variable NT=Oxidation;TA=M;AC=UNIMOD:35;MT=variable NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Deamidated;TA=N,Q;AC=UNIMOD:7;MT=variable NT=Acetyl;TA=N-term;AC=UNIMOD:1;MT=variable 0.6 Da 10 ppm 2
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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[disease] characteristics[pool] characteristics[enrichment process] characteristics[ancestry category] characteristics[age] characteristics[developmental stage] characteristics[sex] characteristics[biological replicate] assay name comment[technical replicate] comment[fraction identifier] comment[label] comment[data file] comment[file uri] comment[instrument] comment[cleavage agent details] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[fragment mass tolerance] comment[precursor mass tolerance] factor value[pool]
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Sample 1 Homo sapiens Epithelial cell Epithelial cell Bone osteosarcoma 1 enrichment of phosphorylated Protein not available not available not available not available 1 run 2 1 1 AC=MS:1002038;NT=label free sample SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep1.raw https://abibuilder.cs.uni-tuebingen.de/archive/openms/Tutorials/Data/PhosphoID_nfcore_testdata/SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep1.raw NT=Orbitrap Fusion ETD;AC=MS:1002417 NT=Trypsin;AC=MS:1001251 "NT=Phospho;TA=S,T,Y;AC=UNIMOD:21;MT=variable" NT=Oxidation;TA=M;AC=UNIMOD:35;MT=variable NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed "NT=Deamidated;TA=N,Q;AC=UNIMOD:7;MT=variable" NT=Acetyl;TA=N-term;AC=UNIMOD:1;MT=variable 0.6 Da 10 ppm 1
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Sample 2 Homo sapiens Epithelial cell Epithelial cell Bone osteosarcoma 2 enrichment of phosphorylated Protein not available not available not available not available 1 run 4 1 1 AC=MS:1002038;NT=label free sample SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep2.raw https://abibuilder.cs.uni-tuebingen.de/archive/openms/Tutorials/Data/PhosphoID_nfcore_testdata/SF_200217_pPeptideLibrary_pool1_HCDnlETcaD_OT_rep2.raw NT=Orbitrap Fusion ETD;AC=MS:1002417 NT=Trypsin;AC=MS:1001251 "NT=Phospho;TA=S,T,Y;AC=UNIMOD:21;MT=variable" NT=Oxidation;TA=M;AC=UNIMOD:35;MT=variable NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed "NT=Deamidated;TA=N,Q;AC=UNIMOD:7;MT=variable" NT=Acetyl;TA=N-term;AC=UNIMOD:1;MT=variable 0.6 Da 10 ppm 2

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