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# test-datasets ` quantms `
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- Test data to be used for automated testing with the nf-core pipeline quantms
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+ Test data to be used for automated testing with the nf-core pipeline quantms (https://github.com/nf-core/quantms )
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## Content of this repository
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- ` testdata ` , contains all inputs needed for the basic CI tests of quantms for every pull request.
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- ` testdata-aws ` , contains data sets for full tests done at every release. It should show all/most capabilities of quantms
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+ - ` testdata ` , contains all inputs needed for the basic CI tests of quantms for every pull request.
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+ - ` testdata-aws ` , contains data sets for full tests done at every release. It should show all/most capabilities of quantms
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and have a rich output to be displayed on the nf-core quantms page.
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- Have a look at the READMEs inside each folder to check where the data came from and more infos.
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+ Have a look at the READMEs inside each folder to check where the data came from and more infos.
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- This folder contains small test data sets for continuous integration.
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- Potentially this can store spectra data as well if it is small enough.
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+ This folder contains small test data sets for continuous integration. Potentially this can store spectra data as well if it is small enough.
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+ Currently, quantms supports four main workflows and data analysis:
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+ - LFQ workflow: Label-free data analysis workflow
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+ - TMT workflow: TMT data analysis workflow
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+ - DIA workflow: LFQ-DIA data analysis workflow
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+ - LFQ Phospho: Phospho localization data analysis workflow
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