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Commits on Dec 12, 2018

• Something's clearly not correct with HMC eggbox example

  ben18785

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• Simple IS within MCMC works really quite well

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Commits on Dec 11, 2018

• Added papers

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• Think MD is working. Next step is to try it on a more reasonable problem

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• Added repulsive HMC and accelerated molecular dynamics

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Commits on Dec 4, 2018

• Now have changed the main functions to allow the last (failed) subtree to appear

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• Worked out why I can't see that NUTS terminates -- wasn't including last (failed) subtree

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Commits on Dec 3, 2018

• Looks like the subtrees are generally what is causing NUTS to terminate

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• Have sorted so that the arrows now point correctly and the labels indicate dot products

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Commits on Nov 30, 2018

• More complex example now working -- still don't fully understand why NUTS is terminating when it does

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• Update s_nuts.nb

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• Update s_nuts.nb

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• Simple animation sort of working

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Commits on Nov 26, 2018

• The returned momenta don't seem consistent with the trajectory taken.

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• Added plot of underlying pdf

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• Got animation working quite nicely (not joining up segments)

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• Cleaned up and at a nice parameter set

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• Both sampling and visualisation appear working

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• Sampling not working but visualisation does

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• Sampling no longer works -- due to a change made earlier

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• Visualisation sort of working

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• Create s_nuts.nb

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• Initial commit

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