title | title_short | tags | authors | affiliations | date | cito-bibliography | event | biohackathon_name | biohackathon_url | biohackathon_location | group | git_url | authors_short | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BioHackEU23 report: Template for the very long title |
BioHackEU23 #26: unknown chemical substances |
|
|
|
30 August 2024 |
paper.bib |
BH23EU |
BioHackathon Japan 2024 |
Fukushima, Japan, 2024 |
Genome variation |
First Author \emph{et al.} |
The widespread use of sequencers has generated a flood of data that has greatly faciliated the analysis and understanding of the human genome. Simple variations such as single nucleotide variants (SNVs) and indels have been integrated with the comprehensive Japanese genetic variation database TogoVar, but there is currently no standardized representation for structural variants. Pangenome graphs have also emerged as a powerful tool to integrate multiple haplotypes. To facilitate the integration of structural variants, we developed a Common Workflow Language (CWL) script to add TogoVar information to variant call format (VCF) files. We also ....
This document use Markdown and you can look at this tutorial.
Please keep sections to a maximum of only two levels.
Tables can be added in the following way, though alternatives are possible:
Table: Note that table caption is automatically numbered and should be given before the table itself.
Header 1 | Header 2 |
---|---|
item 1 | item 2 |
item 3 | item 4 |
A figure is added with:
Lists can be added with:
- Item 1
- Item 2
You can use CiTO annotations, as explained in this BioHackathon Europe 2021 write up and this CiTO Pilot. Using this template, you can cite an article and indicate why you cite that article, for instance DisGeNET-RDF [@citesAsAuthority:Queralt2016].
The syntax in Markdown is as follows: a single intention annotation looks like
[@usesMethodIn:Krewinkel2017]
; two or more intentions are separated
with colons, like [@extends:discusses:Nielsen2017Scholia]
. When you cite two
different articles, you use this syntax: [@citesAsDataSource:Ammar2022ETL; @citesAsDataSource:Arend2022BioHackEU22]
.
Possible CiTO typing annotation include:
- citesAsDataSource: when you point the reader to a source of data which may explain a claim
- usesDataFrom: when you reuse somehow (and elaborate on) the data in the cited entity
- usesMethodIn
- citesAsAuthority
- citesAsEvidence
- citesAsPotentialSolution
- citesAsRecommendedReading
- citesAsRelated
- citesAsSourceDocument
- citesForInformation
- confirms
- documents
- providesDataFor
- obtainsSupportFrom
- discusses
- extends
- agreesWith
- disagreesWith
- updates
- citation: generic citation
...
...