ddqc - Biology-centered data-driven quality control for single cell/nucleus RNA sequencing

Required packages

• numpy>1.20
• matplotlib>=3.4.0
• pandas>=1.2.0
• pegasusio
• pegasuspy>=1.3
• seaborn>=0.11

installation

1. Clone this repository using the following code:

   git clone https://github.com/ayshwaryas/ddqc.git

2. In the root directory of the package run the following command:

   pip install .

3. For the usage instructions refer to tutorials/ddqc_tutorial.ipynb