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  1. hDNA_removal_and_mapping_stats hDNA_removal_and_mapping_stats Public

    A pipeline to remove human DNA from long-read metagenomes and extract microbial reads.

    Nextflow 1

  2. krocus krocus Public

    Nextflow pipeline for MLST from uncorrected long reads

    Nextflow

  3. strainberry strainberry Public

    Nextflow Pipeline for Strain Resolution from Long Reads

    Nextflow 1

  4. ONT-Pipeline ONT-Pipeline Public

    A Nextflow Assembly Pipeline for Downstream Analysis of long reads (ONT) - Genome Assembly .

    Nextflow 3

  5. assembly assembly Public

    Git cloned assembly pipeline for short reads

    HTML

  6. bactmap bactmap Public

    Forked from nf-core/bactmap

    A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

    Nextflow