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1. modulome-workflow modulome-workflow Public

   Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

   HTML 16 24

2. SBRG/precise-db SBRG/precise-db Public

   A high-fidelity E. coli RNA-seq compendium

   Jupyter Notebook 32 19

3. SBRG/Protein_ML SBRG/Protein_ML Public

   Machine learning workflows for analyzing high-throughput protein data

   26 11

4. opencobra/MASS-Toolbox opencobra/MASS-Toolbox Public

   Mass Action Stoichiometric Simulation (MASS) Toolbox

   Mathematica 11 8

5. SBRG/pymodulon SBRG/pymodulon Public

   Python package for analyzing and visualizing iModulons

   Python 13 14

6. SBRG/xplatform_ica_paper SBRG/xplatform_ica_paper Public

   Data and code for "Matrix factorization recovers consistent regulatory signals from disparate datasets"

   Jupyter Notebook