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Remove 2750 lines dead code, move optional files to optional package CI #89: Commit 95b6640 pushed by asad
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Merge 27 files: GameTheory, checks, mechanism helpers/enums (88→64 fi… CI #88: Commit 706cf96 pushed by asad
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Merge 24 files: tools, mapping containers/graph/helpers (111→88 files) CI #87: Commit 8fb5f21 pushed by asad
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Merge 17 files: SMSD filters/matchers, matrix decompositions (128→111… CI #86: Commit 840241a pushed by asad
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Bump SMSD to 4.0.0 CI #85: Commit 9c0d0a1 pushed by asad
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Flatten 19 sub-packages into parents: 28 → 9 packages CI #84: Commit 7c5659e pushed by asad
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Eliminate 4 interfaces/ subdirectories, flatten into parent packages CI #83: Commit 3d69fcb pushed by asad
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Delete 20 orphan files, replace Maths.hypot with Math.hypot (3308 lines) CI #82: Commit 85b738d pushed by asad
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Delete 29 more orphan files across 10 packages CI #81: Commit 6b76c0f pushed by asad
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Delete 38 more files: stereo/wedge, blocks, orphans (4919 lines) CI #80: Commit 87d239a pushed by asad
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Delete graphics package (48 files, 13K lines) — stub ImageGenerator CI #79: Commit f6df27c pushed by asad
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Delete 68 files: replace centres CIP library with CDK native stereo CI #78: Commit 0783c17 pushed by asad
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Remove 1147 lines: 5 dead files + 202 commented-out debug lines acros… CI #77: Commit 1ff84e4 pushed by asad
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Remove ~40 more commented-out debug lines from 15 files CI #76: Commit 3983909 pushed by asad
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Remove 172 more lines: DEBUG flags, commented code, duplicate annotation CI #75: Commit daa09be pushed by asad
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Remove 385 lines of dead code: DEBUG flags, unused fields, commented-… CI #74: Commit 96c1bd5 pushed by asad
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Add buildChemOptions() bridge for future per-algorithm tuning CI #73: Commit da3e122 pushed by asad
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Remove redundant perception + SMILES round-trip in hot path CI #72: Commit 6252ac2 pushed by asad
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Funnel architecture: RINGS-first with quality gate, 11x speedup CI #71: Commit 030a67c pushed by asad
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Bump SMSD to 3.4.0 CI #70: Commit dade01a pushed by asad
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Add CHARGE_TRANSFER/RADICAL_CHANGE flags, remove last DEBUG guards CI #69: Commit 27da1e8 pushed by asad
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Remove Morgan number overhead from MCS thread CI #68: Commit ddb4dd6 pushed by asad
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Fix Maven groupId: com.bioinceptionlabs.rdt → com.bioinceptionlabs CI #67: Commit a09b8cd pushed by asad
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MCS pre-filtering, extended R-matrix with charge tracking, clean code CI #66: Commit 1e957ad pushed by asad
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Early-exit on optimal mapping, clean isBalanced, document scoring CI #65: Commit d1b4086 pushed by asad
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