_config.yml

# -----------------------------------------------------------------------------
# Site settings
# -----------------------------------------------------------------------------

title: Artemy Kolchinsky # the website title (if blank, full name will be used instead)
first_name: Artemy
middle_name: 
last_name: Kolchinsky
email: artemyk@gmail.com
description: > # the ">" symbol means to ignore newlines until "footer_text:"
  Research web site for Artemy Kolchinsky. Complex systems, nonequilibrium statistical physics, information theory
footer_text: >
  Powered by <a href="https://jekyllrb.com/" target="_blank">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio">al-folio</a> theme.
  Hosted by <a href="https://pages.github.com/" target="_blank">GitHub Pages</a>.

icon:  # the emoji used as the favicon
url: https://artemyk.github.io # the base hostname & protocol for your site
baseurl:  # the subpath of your site, e.g. /blog/
last_updated: false # set to true if you want to display last updated in the footer
impressum_path: # set to path to include impressum link in the footer, use the same path as permalink in a page, helps to conform with EU GDPR

# -----------------------------------------------------------------------------
# Theme
# -----------------------------------------------------------------------------

# repo color theme
repo_theme_light: default # https://github.com/anuraghazra/github-readme-stats/blob/master/themes/README.md
repo_theme_dark: dark # https://github.com/anuraghazra/github-readme-stats/blob/master/themes/README.md
repo_trophies:
  enabled: true
  theme_light: flat # https://github.com/ryo-ma/github-profile-trophy
  theme_dark: gitdimmed # https://github.com/ryo-ma/github-profile-trophy

# -----------------------------------------------------------------------------
# RSS Feed
# -----------------------------------------------------------------------------
# will use title and url fields
# Take a look to https://github.com/jekyll/jekyll-feed for more customization

rss_icon: true

# -----------------------------------------------------------------------------
# Layout
# -----------------------------------------------------------------------------

navbar_fixed: true
footer_fixed: true

# Dimensions
max_width: 900px

# TODO: add layout settings (single page vs. multi-page)

# -----------------------------------------------------------------------------
# Open Graph & Schema.org
# -----------------------------------------------------------------------------
# Display links to the page with a preview object on social media.
# see https://schema.org/docs/faq.html for more information
serve_og_meta: false # Include Open Graph meta tags in the HTML head
serve_schema_org: false # Include Schema.org in the HTML head
og_image: # The site-wide (default for all links) Open Graph preview image

# -----------------------------------------------------------------------------
# Social integration
# -----------------------------------------------------------------------------

github_username: artemyk # your GitHub user name
twitter_username: # your Twitter handle
linkedin_username: # your LinkedIn user name
scholar_userid: RmRwJJIAAAAJ # your Google Scholar ID
orcid_id: 0000-0002-3518-9208 # your ORCID ID
medium_username: # your Medium username
quora_username: # your Quora username
publons_id: # your ID on Publons
lattes_id: # your ID on Lattes (Brazilian Lattes CV)
osf_id: # your OSF ID
research_gate_profile: # your profile on ResearchGate
scopus_id: # your profile on Scopus
blogger_url: # your blogger URL
work_url: # work page URL
keybase_username: # your keybase user name
wikidata_id: # your wikidata id
wikipedia_id: # your wikipedia id (Case sensitive)
dblp_url: # your DBLP profile url
stackoverflow_id: # your stackoverflow id
kaggle_id: # your kaggle id
lastfm_id: # your lastfm id
spotify_id: # your spotify id
pinterest_id: # your pinterest id
unsplash_id: # your unsplash id
instagram_id: # your instagram id
facebook_id: # your facebook id
youtube_id: # your youtube channel id (youtube.com/@<youtube_id>)
discord_id: # your discord id (18-digit unique numerical identifier)
zotero_username: # your zotero username
wechat_qr: # filename of your wechat qr-code saved as an image (e.g., wechat-qr.png if saved to assets/img/wechat-qr.png)

#contact_note: >
#  You can even add a little note about which of these is the best way to reach you.

google_analytics: G-0YZ55YKZ87 # out your google-analytics code
# panelbear_analytics: XXXXXXXXX # panelbear analytics site ID

# -----------------------------------------------------------------------------
# Blog
# -----------------------------------------------------------------------------

# blog_name: al-folio  # your blog must have a name for it to show up in the nav bar
# blog_description: a simple whitespace theme for academics
# permalink: /blog/:year/:title/

# # Pagination
# pagination:
#   enabled: true

# # Comments
# disqus_shortname: al-folio # put your disqus shortname

# -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------

collections:
  news:
    defaults:
      layout: post
    output: false
    permalink: /news/:path/
  projects:
    output: false
    permalink: /projects/:path/

announcements:
  enabled: true
  scrollable: true # adds a vertical scroll bar if there are more than 3 news items
  limit: 5 # leave blank to include all the news in the `_news` folder

latest_posts:
  enabled: true
  scrollable: true # adds a vertical scroll bar if there are more than 3 new posts items
  limit: 3 # leave blank to include all the blog posts

# -----------------------------------------------------------------------------
# Jekyll settings
# -----------------------------------------------------------------------------

# Markdown and syntax highlight
markdown: kramdown
highlighter: rouge
kramdown:
  input: GFM
  syntax_highlighter_opts:
    css_class: "highlight"
    span:
      line_numbers: false
    block:
      line_numbers: false
      start_line: 1

# Includes & excludes
include: ["_pages"]
exclude:
  - bin
  - CONTRIBUTING.md
  - CUSTOMIZE.md
  - docker-compose.yml
  - Dockerfile
  - FAQ.md
  - Gemfile
  - Gemfile.lock
  - INSTALL.md
  - LICENSE
  - package.json
  - package-lock.json
  - purgecss.config.js
  - README.md
  - vendor
keep_files:
  - CNAME
  - .nojekyll

# Plug-ins
plugins:
  - jekyll-archives
  - jekyll-email-protect
  - jekyll-feed
  - jekyll-get-json
  - jekyll-imagemagick
  - jekyll-jupyter-notebook
  - jekyll-link-attributes
  - jekyll-minifier
  - jekyll-paginate-v2
  - jekyll/scholar
  - jekyll-sitemap
  - jekyll-toc
  - jekyll-twitter-plugin
  - jemoji

# Sitemap settings
defaults:
  - scope:
      path: "assets"
    values:
      sitemap: false

sass:
  style: compressed

# -----------------------------------------------------------------------------
# Jekyll Minifier
# -----------------------------------------------------------------------------

jekyll-minifier:
  exclude: ["robots.txt"]
  uglifier_args:
    harmony: true

# -----------------------------------------------------------------------------
# Jekyll Archives
# -----------------------------------------------------------------------------

jekyll-archives:
  enabled: # [year, tags, categories] # enables year, tag and category archives (remove if you need to disable one of them).
  layouts:
    year: archive-year
    tag: archive-tag
    category: archive-category
  permalinks:
    year: "/blog/:year/"
    tag: "/blog/tag/:name/"
    category: "/blog/category/:name/"

display_tags: ["formatting", "images", "links", "math", "code"] # these tags will be displayed on the front page of your blog
display_categories: ["blockquotes"] # these categories will be displayed on the front page of your blog

# -----------------------------------------------------------------------------
# Jekyll Scholar
# -----------------------------------------------------------------------------

scholar:

  last_name: [Kolchinsky]
  first_name: [Artemy]

  style: apa
  locale: en

  source: /_bibliography/
  bibliography: papers.bib
  bibliography_template: bib
  # Note: if you have latex math in your bibtex, the latex filter
  # preprocessing may conflict with MathJAX if the latter is enabled.
  # See https://github.com/alshedivat/al-folio/issues/357.
  bibtex_filters: [latex, smallcaps, superscript]

  replace_strings: true
  join_strings: true

  details_dir: bibliography
  details_link: Details

  query: "@*"
  group_by: year
  group_order: descending

# Display different badges withs stats for your publications
enable_publication_badges:
  altmetric: true # Altmetric badge (https://www.altmetric.com/products/altmetric-badges/)
  dimensions: true # Dimensions badge (https://badge.dimensions.ai/)

# Filter out certain bibtex entry keywords used internally from the bib output
filtered_bibtex_keywords:
  [abbr, abstract, altmetric, arxiv, bibtex_show, blog, code, html, pdf, poster, preview, selected, slides, supp, video, website]

# Maximum number of authors to be shown for each publication (more authors are visible on click)
max_author_limit: 3 # leave blank to always show all authors
more_authors_animation_delay: 10 # more authors are revealed on click using animation; smaller delay means faster animation

# Enables publication thumbnails. If disabled, none of the publications will display thumbnails, even if specified in the bib entry.
enable_publication_thumbnails: true

# -----------------------------------------------------------------------------
# Jekyll Link Attributes
# -----------------------------------------------------------------------------

# These are the defaults
external_links:
  enabled: true
  rel: external nofollow noopener
  target: _blank
  exclude:

# -----------------------------------------------------------------------------
# Responsive WebP Images
# -----------------------------------------------------------------------------

# MAKE SURE imagemagick is installed and on your PATH before enabling imagemagick. In a terminal, run:
#   convert -version
imagemagick:
  enabled: true # enables responsive images for your site (recommended, see https://github.com/alshedivat/al-folio/issues/537)
  widths:
    - 480
    - 800
    - 1400
  input_directories:
    - assets/img/
  input_formats:
    - ".jpg"
    - ".jpeg"
    - ".png"
    - ".tiff"
    - ".gif"
  output_formats:
    webp: "-quality 85"

# -----------------------------------------------------------------------------
# Optional Features
# -----------------------------------------------------------------------------

enable_google_analytics:    true
enable_panelbear_analytics: false
enable_mansory:             true
enable_math:                true
enable_tooltips:            false
enable_darkmode:            true
enable_navbar_social:       false

# -----------------------------------------------------------------------------
# Library versions
# -----------------------------------------------------------------------------

bootstrap-table:
  version: "1.22.1"
jquery:
  version: "3.6.0"
  integrity: "sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4="
mathjax:
  version: "3.2.0"
masonry:
  version: "4.2.2"
  integrity: "sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI="
mdb:
  version: "4.20.0"
  integrity:
    css: "sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw="
    js: "sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA="
medium_zoom:
  version: "1.0.8"
  integrity: "sha256-7PhEpEWEW0XXQ0k6kQrPKwuoIomz8R8IYyuU1Qew4P8="

# -----------------------------------------------------------------------------
# Get external JSON data
# -----------------------------------------------------------------------------

jekyll_get_json:
  - data: resume
    json: assets/json/resume.json # it can also be an url
jsonresume:
  - basics
  - work
  - education
  - publications
  - projects
  - volunteer
  - awards
  - certificates
  - skills
  - languages
  - interests
  - references