Skip to content

Pull requests: arq5x/lumpy-sv

New pull request New
Clear current search query, filters, and sorts
5 Open 64 Closed
5 Open 64 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

add filter.c and its dependency, htslib.
#144 by brentp was merged Sep 26, 2016 Loading…
add an ssshtest
#138 by brentp was merged Aug 18, 2016 Loading…
add svtyping to lumpy_smooth
#150 by brentp was merged Nov 16, 2016 Loading…
support cram in lumpy filter
#234 by brentp was merged Feb 7, 2018 Loading…
exclude reads that are unmapped, not primary, failing-qc, duplicate
#237 by brentp was merged Apr 4, 2018 Loading…
use some cram decode stuff to reduce run-time of lumpy_filter for cram
#269 by brentp was merged Sep 11, 2018 Loading…
2
count total number of aligned reads inside of lumpy_filter
#284 by brentp was merged Jan 8, 2019 Loading…
1
link to smoove
#290 by brentp was merged Feb 13, 2019 Loading…
Changes to get NM in output BAM.
#271 by ernfrid was merged Sep 26, 2018 Loading…
3
Change inline functions to static inline
#273 by ernfrid was merged Oct 3, 2018 Loading…
match behavior of extract_sv_reads and samblaster
#272 by brentp was merged Oct 2, 2018 Loading…
Only include paired-end sequencing reads in discordants file
#279 by ernfrid was merged Nov 27, 2018 Loading…
6
return 0
#300 by brentp was merged Apr 11, 2019 Loading…
Add batchx code
#380 by idelvall was merged Jun 7, 2022 Loading…
ProTip! Exclude everything labeled bug with -label:bug.