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Commits on Mar 8, 2017

• Prevent improper access of integerColorMap

  arjun-1

  committed
  7e89fd6

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• Fix displaying integer values in AlignmentViewer

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  arjun-1

  committed
  52b6d00

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Commits on Mar 2, 2017

• bug fix

  alexeid

  committed
  816a152

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Commits on Mar 1, 2017

• small fixes so that TreeStat2 works.

  alexeid

  committed
  de96818

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Commits on Feb 21, 2017

• show "Not all partitions have their rate estimated" warning in SiteModelPanel correctly. fixes #667

  rbouckaert

  committed
  0c53d65

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Commits on Feb 19, 2017

• ensure totalCount on sequences is set properly when user switches data type for fasta import #180

  rbouckaert

  committed
  d471bf9

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• prevent positive infinite priors. fixes #665

  rbouckaert

  committed
  7b5496e

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Commits on Feb 14, 2017

• suppress CUDA check on OSX if CUDA cannot be uninstalled. fixes #663

  rbouckaert

  committed
  0f77e6a

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Commits on Feb 13, 2017

• prevent overly long operator label names in Operators panel in BEAUti. fixes #661

  rbouckaert

  committed
  737a9c1

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Commits on Feb 5, 2017

• fix for starting CalibratedYuleModel. closes #662

  rbouckaert

  committed
  d37fbf3

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Commits on Feb 3, 2017

• Fixed typo in datatype query dialog.

  tgvaughan

  authored
  3f56d5a

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Commits on Feb 2, 2017

• adjust copyright time. #651

  rbouckaert

  committed
  cb61a53

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• sort log items by partition name after grouping by item name. closes #660

  rbouckaert

  committed
  0d45921

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Commits on Feb 1, 2017

• remove trailing full stop from log header. fixes #659

  rbouckaert

  committed
  1a2be45

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Commits on Jan 29, 2017

• prevent double counting of offset in ParametricDistribution.sample(). fixes #658

  rbouckaert

  committed
  64fa647

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Commits on Jan 23, 2017

• deal with test case #657

  rbouckaert

  committed
  02fc72f

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• ensure special XML characters in IDs of StateNodes are normalised in state file. fixes #657

  rbouckaert

  committed
  47458b5

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Commits on Jan 19, 2017

• add hack to deal with old bugs in package templates #651

  rbouckaert

  committed
  5ae67d3

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Commits on Jan 18, 2017

• add getPatternLogLikelihoods method. closes #655

  rbouckaert

  committed
  d532f23

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• add childrenChanged method to Tree. closes #654

  rbouckaert

  committed
  40759fd

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• add -noSA flag to suppress sampled ancestor behaviour in TreeAnnotator. fixes #649

  rbouckaert

  committed
  84efba6

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• calc hpd2D intervals (if any) by default in TreeAnnotator. fixes #653

  rbouckaert

  committed
  e0edecb

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Commits on Jan 17, 2017

• fail gracefully on missing colon before matrix keyword in NexusParser. #652

  rbouckaert

  committed
  2fbe73c

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Commits on Jan 15, 2017

• update version numbers to 2.4.5 #651

  rbouckaert

  committed
  f52b9d9

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• Merge branch 'master' of github.com:CompEvol/beast2

  rbouckaert

  committed
  9418b48

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• update version history #651

  rbouckaert

  committed
  a2c440d

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• update README #651

  rbouckaert

  committed
  91b1898

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Commits on Jan 11, 2017

• update README to point out how to run under Linux #651

  rbouckaert

  committed
  1c5ae4d

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Commits on Jan 10, 2017

• make StarBeastStartState take parameter bounds in account. fixes #650

  rbouckaert

  committed
  5394939

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• smoother deletion of archived packages via package manager #648

  rbouckaert

  committed
  9aecfcc

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• manage mix of normal and archive versions #648

  rbouckaert

  committed
  7fe2694

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• make sure archive packages are loaded when not installed in usual place #648

  rbouckaert

  committed
  d9e4431

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• add GUI components for managing package versions #648

  rbouckaert

  committed
  c1cf2a8

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Commits on Jan 9, 2017

• add -stricversions flag to BeastMain to load only packages and vesrions specified in 'required' attribute #648

  rbouckaert

  committed
  262bb2d

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• allow deletion of packages by specific version number #648

  rbouckaert

  committed
  1ef24d2

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