notebooks/wellWrittenPapers.html

<!DOCTYPE html>
<html lang="en">

<head>
    <title>Arghya Dutta</title>
    <meta charset="utf-8">
    <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
    <link rel="apple-touch-icon" sizes="180x180" href="../assets/favicon_io/apple-touch-icon.png">
    <link rel="icon" type="image/png" sizes="32x32" href="../assets/favicon_io/favicon-32x32.png">
    <link rel="icon" type="image/png" sizes="16x16" href="../assets/favicon_io/favicon-16x16.png">
    <link rel="manifest" href="../assets/favicon_io/site.webmanifest">
    <link rel="stylesheet" href="../assets/style.css">
    <script id="MathJax-script" async src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"> </script>
    <script>window.MathJax = { tex: { inlineMath: [['$', '$'], ['\\(', '\\)']] } };</script>
</head>
<em><a href="../notebooks.html">Notebooks</a></em>

<h1>Few well-written papers</h1>

<h2>Well-written papers</h2>
   
    <p>
        Some papers that I liked for their prose; of course, the content is great, too!
    </p>
    
    <dl>
    
        <dt>Deserno, M. Fluid Lipid Membranes – a Primer <a href="https://www.cmu.edu/biolphys/deserno/pdf/membrane_theory.pdf">link</a></dt>
        <dt>Overbeek, J. T. G.; Voorn, M. J. Phase Separation in Polyelectrolyte Solutions. Theory of Complex Coacervation. Journal of Cellular and Comparative Physiology 1957, 49 (S1), 7–26. <a href="https://doi.org/10.1002/jcp.1030490404">link</a>. </dt>
        <dt>Luttinger, J. M. An Exactly Soluble Model of a Many‐Fermion System. Journal of Mathematical Physics 1963, 4 (9), 1154–1162. <a href="https://doi.org/10.1063/1.1704046">link</a>. </dt>
        <dt>Mandelbrot, B. How Long Is the Coast of Britain? Statistical Self-Similarity and Fractional Dimension. Science 1967, 156 (3775), 636–638. <a href="https://doi.org/10.1126/science.156.3775.636">link</a>. </dt>
        <dt>Bialek, W. Physical Limits to Sensation and Perception. Annu. Rev. Biophys. Biophys. Chem. 1987, 16 (1), 455–478. <a href="https://doi.org/10.1146/annurev.bb.16.060187.002323">link</a>. </dt>
        <dt>Binder, K. Theory of First-Order Phase Transitions. Rep. Prog. Phys. 1987, 50 (7), 783. <a href="https://doi.org/10.1088/0034-4885/50/7/001">link</a>. </dt>
        <dt>Thurston, W. P. On Proof and Progress in Mathematics. arXiv March 31, 1994. <a href="https://doi.org/10.48550/arXiv.math/9404236">link</a>. </dt>
        <dt>Efron, B.; Halloran, E.; Holmes, S. Bootstrap Confidence Levels for Phylogenetic Trees. Proceedings of the National Academy of Sciences 1996, 93 (23), 13429–13429. <a href="https://doi.org/10.1073/pnas.93.23.13429">link</a>. </dt>
        <dt>Neidhardt, F. C. Bacterial Growth: Constant Obsession with dN/Dt. J Bacteriol 1999, 181 (24), 7405–7408. <a href="https://doi.org/10.1128/JB.181.24.7405-7408.1999">link</a>. </dt>
        <dt>Everaers, R.; Sukumaran, S. K.; Grest, G. S.; Svaneborg, C.; Sivasubramanian, A.; Kremer, K. Rheology and Microscopic Topology of Entangled Polymeric Liquids. Science 2004, 303 (5659), 823–826. <a href="https://doi.org/10.1126/science.1091215">link</a>. </dt>
        <dt>Marder, E. Grandmother Elephants. eLife 2013, 2, e01140. <a href="https://doi.org/10.7554/eLife.01140">link</a>. </dt>
        <dt>Guven, J.; Manrique, G. Arresting the Collapse of a Catenary Arch. arXiv:1710.03433 [cond-mat, physics:physics] 2017. </dt>
        <dt>França, T. F. A.; Monserrat, J. M. Writing Papers to Be Memorable, Even When They Are Not Really Read. BioEssays 2019, 41 (5), 1900035. <a href="https://doi.org/10.1002/bies.201900035">link</a>. </dt>
        <dt>Galstyan, V.; Phillips, R. Allostery and Kinetic Proofreading. J. Phys. Chem. B 2019, 123 (51), 10990–11002. <a href="https://doi.org/10.1021/acs.jpcb.9b08380">link</a>. </dt>
        <dt>Jia, X.; Lynch, A.; Huang, Y.; Danielson, M.; Lang’at, I.; Milder, A.; Ruby, A. E.; Wang, H.; Friedler, S. A.; Norquist, A. J.; Schrier, J. Anthropogenic Biases in Chemical Reaction Data Hinder Exploratory Inorganic Synthesis. Nature 2019, 573 (7773), 251–255. <a href="https://doi.org/10.1038/s41586-019-1540-5">link</a>. </dt>
        <dt>Tanaka, H.; Tong, H.; Shi, R.; Russo, J. Revealing Key Structural Features Hidden in Liquids and Glasses. Nat Rev Phys 2019, 1 (5), 333–348. <a href="https://doi.org/10.1038/s42254-019-0053-3">link</a>. </dt>
        <dt>Cohen, A. E.; Shi, Z. Do Cell Membranes Flow Like Honey or Jiggle Like Jello? BioEssays 2020, 42 (1), 1900142. <a href="https://doi.org/10.1002/bies.201900142">link</a>. </dt>
        <dt>Fjelland, R. Why General Artificial Intelligence Will Not Be Realized. Humanit Soc Sci Commun 2020, 7 (1), 10. <a href="https://doi.org/10.1057/s41599-020-0494-4">link</a>. </dt>
        <dt>Foley, S.; Deserno, M. Stabilizing Leaflet Asymmetry under Differential Stress in a Highly Coarse-Grained Lipid Membrane Model. J. Chem. Theory Comput. 2020, 16 (11), 7195–7206. <a href="https://doi.org/10.1021/acs.jctc.0c00862">link</a>. </dt>
        <dt>Sing, C. E.; Perry, S. L. Recent Progress in the Science of Complex Coacervation. Soft Matter 2020, 16 (12), 2885–2914. <a href="https://doi.org/10.1039/D0SM00001A">link</a>. </dt>
        <dt>Deshpande, N. S.; Furbish, D. J.; Arratia, P. E.; Jerolmack, D. J. The Perpetual Fragility of Creeping Hillslopes. Nat Commun 2021, 12 (1), 3909. <a href="https://doi.org/10.1038/s41467-021-23979-z">link</a>. </dt>
        <dt>van de Schoot, R.; Depaoli, S.; King, R.; Kramer, B.; Märtens, K.; Tadesse, M. G.; Vannucci, M.; Gelman, A.; Veen, D.; Willemsen, J.; Yau, C. Bayesian Statistics and Modelling. Nat Rev Methods Primers 2021, 1 (1), 1–26. <a href="https://doi.org/10.1038/s43586-020-00001-2">link</a>. </dt>
        <dt>Braberg, H.; Echeverria, I.; Kaake, R. M.; Sali, A.; Krogan, N. J. From Systems to Structure — Using Genetic Data to Model Protein Structures. Nat Rev Genet 2022, 23 (6), 342–354. <a href="https://doi.org/10.1038/s41576-021-00441-w">link</a>.</dt>
        <dt>Greener, Joe G., Shaun M. Kandathil, Lewis Moffat, and David T. Jones. “A Guide to Machine Learning for Biologists.” Nature Reviews Molecular Cell Biology 23, no. 1 (January 2022): 40–55. <a href="https://doi.org/10.1038/s41580-021-00407-0">link</a>. </dt>
        <dt>Cubuk, J.; Soranno, A. Macromolecular Crowding and Intrinsically Disordered Proteins: A Polymer Physics Perspective. ChemSystemsChem 2022. <a href="https://doi.org/10.1002/syst.202100051">link</a>. </dt>
        <dt>Ghosh, A.; Radhakrishnan, J.; Chaikin, P. M.; Levine, D.; Ghosh, S. Coupled Dynamical Phase Transitions in Driven Disk Packings. Phys. Rev. Lett. 2022, 129 (18), 188002. <a href="https://doi.org/10.1103/PhysRevLett.129.188002">link</a>. I liked how concise and informative the abstract is!</dt>
        <dt>Bauer, M.; Bialek, W. Information Bottleneck in Molecular Sensing. PRX Life 2023, 1 (2), 023005. <a href="https://doi.org/10.1103/PRXLife.1.023005">link</a>. </dt>
        <dt>Park, J. J.; Lu, Y.-K.; Jamison, A. O.; Tscherbul, T. V.; Ketterle, W. A Feshbach Resonance in Collisions between Triplet Ground-State Molecules. Nature 2023, 614 (7946), 54–58. <a href="https://doi.org/10.1038/s41586-022-05635-8">link</a>. Another precise and well-written abstract!</dt>
        <dt>Powers, A. S.; Pham, V.; Burger, W. A. C.; Thompson, G.; Laloudakis, Y.; Sexton, P. M.; Paul, S. M.; Christopoulos, A.; Thal, D. M.; Felder, C. C.; Valant, C.; Dror, R. O. Structural Basis of Efficacy-Driven Ligand Selectivity at GPCRs. Nat Chem Biol 2023, 1–10. <a href="https://doi.org/10.1038/s41589-022-01247-5">link</a>.</dt>
        <dt>Jo, M. H.; Meneses, P.; Yang, O.; Carcamo, C. C.; Pangeni, S.; Ha, T. Determination of Single-Molecule Loading Rate during Mechanotransduction in Cell Adhesion. Science 2024, 383 (6689), 1374–1379. <a href="https://doi.org/10.1126/science.adk6921">link</a></dt>
    
</dl>


</body>

</html>