annotation_randomicity.ipynb

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    "antibody_labels_run1 = pd.read_csv(f'./data/PBMC1/antibody_annotation/antibody_labels.csv', index_col=0)\n",
    "antibody_labels_run2 = pd.read_csv(f'./data/PBMC1/antibody_annotation2/antibody_labels.csv', index_col=0)\n",
    "antibody_labels_run3 = pd.read_csv(f'./data/PBMC1/antibody_annotation3/antibody_labels.csv', index_col=0)\n",
    "antibody_labels = antibody_labels_run1.merge(antibody_labels_run2, how='inner', on=['cell'], suffixes=['_run1', '_run2'])\n",
    "antibody_labels = antibody_labels.merge(antibody_labels_run3, how='inner', on=['cell'])\n",
    "antibody_labels.rename(columns={'cluster.ids': 'cluster.ids_run3'}, inplace=True)\n",
    "sankey_plot(\n",
    "    [\n",
    "        antibody_labels['cluster.ids_run1'].to_list(),\n",
    "        antibody_labels['cluster.ids_run2'].to_list(),\n",
    "        antibody_labels['cluster.ids_run3'].to_list(),\n",
    "    ],\n",
    "    ['run 1', 'run 2', 'run 3'],\n",
    "    path='random.html',\n",
    "    title='PBMC1'\n",
    ")"
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