Deprecated and added a few java api methods for corresponding scala api.

PR [402](https://github.com/apache/incubator-spark/pull/402) from incubator repo.

Author: Prashant Sharma <prashant.s@imaginea.com>

Closes #19 from ScrapCodes/java-api-completeness and squashes the following commits:

11d0c2b [Prashant Sharma] Integer -> java.lang.Integer
737819a [Prashant Sharma] SPARK-1095 add explicit return types to APIs.
3ddc8bb [Prashant Sharma] Deprected *With functions in scala and added a few missing Java APIs

Author: ScrapCodes

core/src/main/scala/org/apache/spark/SparkContext.scala

@@ -240,6 +240,7 @@ class SparkContext(
     localProperties.set(props)
   }
 
+  @deprecated("Properties no longer need to be explicitly initialized.", "1.0.0")
   def initLocalProperties() {
     localProperties.set(new Properties())
   }
@@ -308,7 +309,7 @@ class SparkContext(
   private val dagSchedulerSource = new DAGSchedulerSource(this.dagScheduler, this)
   private val blockManagerSource = new BlockManagerSource(SparkEnv.get.blockManager, this)
 
-  def initDriverMetrics() {
+  private def initDriverMetrics() {
     SparkEnv.get.metricsSystem.registerSource(dagSchedulerSource)
     SparkEnv.get.metricsSystem.registerSource(blockManagerSource)
   }

core/src/main/scala/org/apache/spark/api/java/JavaRDD.scala

@@ -126,6 +126,8 @@ class JavaRDD[T](val rdd: RDD[T])(implicit val classTag: ClassTag[T])
   def subtract(other: JavaRDD[T], p: Partitioner): JavaRDD[T] =
     wrapRDD(rdd.subtract(other, p))
 
+  def generator: String = rdd.generator
+
   override def toString = rdd.toString
 
   /** Assign a name to this RDD */

core/src/main/scala/org/apache/spark/api/java/JavaRDDLike.scala

@@ -74,7 +74,7 @@ trait JavaRDDLike[T, This <: JavaRDDLike[T, This]] extends Serializable {
    * of the original partition.
    */
   def mapPartitionsWithIndex[R: ClassTag](
-      f: JFunction2[Int, java.util.Iterator[T], java.util.Iterator[R]],
+      f: JFunction2[java.lang.Integer, java.util.Iterator[T], java.util.Iterator[R]],
       preservesPartitioning: Boolean = false): JavaRDD[R] =
     new JavaRDD(rdd.mapPartitionsWithIndex(((a,b) => f(a,asJavaIterator(b))),
         preservesPartitioning))

core/src/main/scala/org/apache/spark/api/java/JavaSparkContext.scala

@@ -17,6 +17,7 @@
 
 package org.apache.spark.api.java
 
+import java.util
 import java.util.{Map => JMap}
 
 import scala.collection.JavaConversions
@@ -92,6 +93,24 @@ class JavaSparkContext(val sc: SparkContext) extends JavaSparkContextVarargsWork
 
   private[spark] val env = sc.env
 
+  def isLocal: java.lang.Boolean = sc.isLocal
+
+  def sparkUser: String = sc.sparkUser
+
+  def master: String = sc.master
+
+  def appName: String = sc.appName
+
+  def jars: util.List[String] = sc.jars
+
+  def startTime: java.lang.Long = sc.startTime
+
+  /** Default level of parallelism to use when not given by user (e.g. parallelize and makeRDD). */
+  def defaultParallelism: java.lang.Integer = sc.defaultParallelism
+
+  /** Default min number of partitions for Hadoop RDDs when not given by user */
+  def defaultMinSplits: java.lang.Integer = sc.defaultMinSplits
+
   /** Distribute a local Scala collection to form an RDD. */
   def parallelize[T](list: java.util.List[T], numSlices: Int): JavaRDD[T] = {
     implicit val ctag: ClassTag[T] = fakeClassTag

core/src/main/scala/org/apache/spark/rdd/RDD.scala

@@ -543,7 +543,8 @@ abstract class RDD[T: ClassTag](
    * additional parameter is produced by constructA, which is called in each
    * partition with the index of that partition.
    */
-  def mapWith[A: ClassTag, U: ClassTag]
+  @deprecated("use mapPartitionsWithIndex", "1.0.0")
+  def mapWith[A, U: ClassTag]
       (constructA: Int => A, preservesPartitioning: Boolean = false)
       (f: (T, A) => U): RDD[U] = {
     mapPartitionsWithIndex((index, iter) => {
@@ -557,7 +558,8 @@ abstract class RDD[T: ClassTag](
    * additional parameter is produced by constructA, which is called in each
    * partition with the index of that partition.
    */
-  def flatMapWith[A: ClassTag, U: ClassTag]
+  @deprecated("use mapPartitionsWithIndex and flatMap", "1.0.0")
+  def flatMapWith[A, U: ClassTag]
       (constructA: Int => A, preservesPartitioning: Boolean = false)
       (f: (T, A) => Seq[U]): RDD[U] = {
     mapPartitionsWithIndex((index, iter) => {
@@ -571,7 +573,8 @@ abstract class RDD[T: ClassTag](
    * This additional parameter is produced by constructA, which is called in each
    * partition with the index of that partition.
    */
-  def foreachWith[A: ClassTag](constructA: Int => A)(f: (T, A) => Unit) {
+  @deprecated("use mapPartitionsWithIndex and foreach", "1.0.0")
+  def foreachWith[A](constructA: Int => A)(f: (T, A) => Unit) {
     mapPartitionsWithIndex { (index, iter) =>
       val a = constructA(index)
       iter.map(t => {f(t, a); t})
@@ -583,7 +586,8 @@ abstract class RDD[T: ClassTag](
    * additional parameter is produced by constructA, which is called in each
    * partition with the index of that partition.
    */
-  def filterWith[A: ClassTag](constructA: Int => A)(p: (T, A) => Boolean): RDD[T] = {
+  @deprecated("use mapPartitionsWithIndex and filter", "1.0.0")
+  def filterWith[A](constructA: Int => A)(p: (T, A) => Boolean): RDD[T] = {
     mapPartitionsWithIndex((index, iter) => {
       val a = constructA(index)
       iter.filter(t => p(t, a))