[SEDONA-447] pre-commit: apply end-of-file-fixer to more files (#1147)

.pre-commit-config.yaml

@@ -33,8 +33,7 @@ repos:
       # - id: check-yaml
       - id: detect-private-key
       - id: end-of-file-fixer
-        files: \.(ipynb|java|js|md|py|R|scala|sh|txt|xml|yaml|yml)$
-        exclude: ^docs/image|^spark/common/src/test/resources
+        exclude: \.svg$|^docs/image|^spark/common/src/test/resources
       - id: trailing-whitespace
         files: \.(ipynb|java|py|R|scala|sh|xml|yaml|yml)$
   - repo: https://github.com/igorshubovych/markdownlint-cli

LICENSE

@@ -251,4 +251,4 @@ spark/common/src/test/resources/zcta510.csv
 
 MOD11C2 v006 from NASA
 ---------------
-spark/common/src/test/resources/raster/test5.TIFF
+spark/common/src/test/resources/raster/test5.TIFF

NOTICE

@@ -9,4 +9,4 @@ The Apache Software Foundation (http://www.apache.org/).
 GeoSpark development team
 Copyright 2015-2020
 
-This product was derived from the GeoSpark project.
+This product was derived from the GeoSpark project.

R/vignettes/articles/apache-sedona.Rmd

@@ -465,4 +465,3 @@ sc %>% spark_disconnect()
 spark_disconnect_all()
 rm(sc)
 ```
-

R/vignettes/articles/raster.Rmd

@@ -121,4 +121,4 @@ raster %>%
                      ))
 
 dir(dest_file, recursive = TRUE)
-```
+```

binder/data/ne_50m_admin_0_countries_lakes/ne_50m_admin_0_countries_lakes.cpg

@@ -1 +1 @@
-UTF-8
+UTF-8

binder/data/ne_50m_admin_0_countries_lakes/ne_50m_admin_0_countries_lakes.prj

@@ -1 +1 @@
-GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137,298.257223563]],PRIMEM["Greenwich",0],UNIT["Degree",0.017453292519943295]]

binder/data/ne_50m_airports/ne_50m_airports.prj

@@ -1 +1 @@
-GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.017453292519943295]]
+GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.017453292519943295]]

binder/data/primaryroads-linestring.csv

@@ -13358,4 +13358,4 @@
 -118.011385,33.636805,-118.011385,33.874765,-117.728577,33.874765,-117.728577,33.636805
 -117.957224,33.396548,-117.957224,33.707878,-117.593655,33.707878,-117.593655,33.396548
 -118.011385,33.396548,-118.011385,33.874765,-117.593655,33.874765,-117.593655,33.396548
--118.093285,33.639046,-118.093285,33.785847,-117.73071,33.785847,-117.73071,33.639046
+-118.093285,33.639046,-118.093285,33.785847,-117.73071,33.785847,-117.73071,33.639046

binder/data/testPolygon.json

@@ -997,4 +997,4 @@
 { "type": "Feature", "properties": { "STATEFP": "01", "COUNTYFP": "101", "TRACTCE": "005606", "BLKGRPCE": "1", "AFFGEOID": "1500000US011010056061", "GEOID": "011010056061", "NAME": "1", "LSAD": "BG", "ALAND": 801162, "AWATER": 0 }, "geometry": { "type": "Polygon", "coordinates": [ [ [ -86.225964, 32.329689 ], [ -86.225601, 32.334152 ], [ -86.22491, 32.33576 ], [ -86.223165, 32.335361 ], [ -86.219498, 32.338337 ], [ -86.219263, 32.340393 ], [ -86.216669, 32.335147 ], [ -86.216911, 32.334722 ], [ -86.222072, 32.327736 ], [ -86.222438, 32.323534 ], [ -86.225534, 32.323585 ], [ -86.226322, 32.326515 ], [ -86.224605, 32.327441 ], [ -86.22643, 32.329379 ], [ -86.225964, 32.329689 ] ] ] } },
 { "type": "Feature", "properties": { "STATEFP": "01", "COUNTYFP": "123", "TRACTCE": "962100", "BLKGRPCE": "1", "AFFGEOID": "1500000US011239621001", "GEOID": "011239621001", "NAME": "1", "LSAD": "BG", "ALAND": 11918090, "AWATER": 8890 }, "geometry": { "type": "Polygon", "coordinates": [ [ [ -86.008317, 32.97571 ], [ -86.005443, 32.975625 ], [ -86.001856, 32.976885 ], [ -85.999682, 32.977137 ], [ -85.997955, 32.978636 ], [ -85.995321, 32.979754 ], [ -85.991741, 32.979332 ], [ -85.99053, 32.978448 ], [ -85.987949, 32.979165 ], [ -85.987038, 32.980761 ], [ -85.985416, 32.981506 ], [ -85.982884, 32.980677 ], [ -85.978147, 32.980547 ], [ -85.974774, 32.981765 ], [ -85.972255, 32.981237 ], [ -85.969194, 32.981758 ], [ -85.966112, 32.979385 ], [ -85.964527, 32.979571 ], [ -85.963239, 32.978251 ], [ -85.962096, 32.975507 ], [ -85.961262, 32.975337 ], [ -85.963599, 32.973 ], [ -85.963266, 32.966611 ], [ -85.963089, 32.96499 ], [ -85.962538, 32.961101 ], [ -85.961773, 32.959668 ], [ -85.95995, 32.958304 ], [ -85.960927, 32.957624 ], [ -85.963989, 32.957535 ], [ -85.966126, 32.955564 ], [ -85.966809, 32.953744 ], [ -85.971747, 32.955823 ], [ -85.975199, 32.956063 ], [ -85.977141, 32.950439 ], [ -85.982594, 32.946612 ], [ -85.987134, 32.946644 ], [ -85.995555, 32.954372 ], [ -86.008224, 32.966019 ], [ -86.008263, 32.966054 ], [ -86.008317, 32.97571 ] ] ] } },
 { "type": "Feature", "properties": { "STATEFP": "01", "COUNTYFP": "069", "TRACTCE": "041500", "BLKGRPCE": "2", "AFFGEOID": "1500000US010690415002", "GEOID": "010690415002", "NAME": "2", "LSAD": "BG", "ALAND": 5866149, "AWATER": 0 }, "geometry": { "type": "Polygon", "coordinates": [ [ [ -85.39169, 31.245602 ], [ -85.388991, 31.254076 ], [ -85.387238, 31.257291 ], [ -85.379261, 31.267746 ], [ -85.376872, 31.270864 ], [ -85.374415, 31.274086 ], [ -85.374142, 31.274113 ], [ -85.369206, 31.276179 ], [ -85.365396, 31.276377 ], [ -85.364533, 31.276374 ], [ -85.362924, 31.274573 ], [ -85.360928, 31.272173 ], [ -85.358033, 31.270674 ], [ -85.362115, 31.270675 ], [ -85.356142, 31.270397 ], [ -85.353533, 31.269674 ], [ -85.352197, 31.26767 ], [ -85.361994, 31.261014 ], [ -85.363077, 31.260593 ], [ -85.367576, 31.259721 ], [ -85.369956, 31.258915 ], [ -85.375599, 31.256275 ], [ -85.377328, 31.254791 ], [ -85.378227, 31.251226 ], [ -85.377533, 31.2487 ], [ -85.378261, 31.247353 ], [ -85.378209, 31.241966 ], [ -85.382698, 31.242204 ], [ -85.391601, 31.242555 ], [ -85.39169, 31.245602 ] ] ] } },
-{ "type": "Feature", "properties": { "STATEFP": "01", "COUNTYFP": "073", "TRACTCE": "014404", "BLKGRPCE": "3", "AFFGEOID": "1500000US010730144043", "GEOID": "010730144043", "NAME": "3", "LSAD": "BG", "ALAND": 977209, "AWATER": 0 }, "geometry": { "type": "Polygon", "coordinates": [ [ [ -86.822453, 33.43276 ], [ -86.818613, 33.437402 ], [ -86.813823, 33.440302 ], [ -86.812912, 33.440291 ], [ -86.810371, 33.440267 ], [ -86.809839, 33.440272 ], [ -86.808018, 33.440291 ], [ -86.808349, 33.438169 ], [ -86.810019, 33.436051 ], [ -86.81064, 33.435288 ], [ -86.81151, 33.43395 ], [ -86.811846, 33.432813 ], [ -86.811673, 33.431542 ], [ -86.813019, 33.432259 ], [ -86.815062, 33.432654 ], [ -86.817, 33.430923 ], [ -86.816988, 33.429963 ], [ -86.817113, 33.429844 ], [ -86.81787, 33.429842 ], [ -86.819472, 33.42801 ], [ -86.819636, 33.427433 ], [ -86.820477, 33.42805 ], [ -86.822167, 33.42982 ], [ -86.823349, 33.431704 ], [ -86.822453, 33.43276 ] ] ] } },
+{ "type": "Feature", "properties": { "STATEFP": "01", "COUNTYFP": "073", "TRACTCE": "014404", "BLKGRPCE": "3", "AFFGEOID": "1500000US010730144043", "GEOID": "010730144043", "NAME": "3", "LSAD": "BG", "ALAND": 977209, "AWATER": 0 }, "geometry": { "type": "Polygon", "coordinates": [ [ [ -86.822453, 33.43276 ], [ -86.818613, 33.437402 ], [ -86.813823, 33.440302 ], [ -86.812912, 33.440291 ], [ -86.810371, 33.440267 ], [ -86.809839, 33.440272 ], [ -86.808018, 33.440291 ], [ -86.808349, 33.438169 ], [ -86.810019, 33.436051 ], [ -86.81064, 33.435288 ], [ -86.81151, 33.43395 ], [ -86.811846, 33.432813 ], [ -86.811673, 33.431542 ], [ -86.813019, 33.432259 ], [ -86.815062, 33.432654 ], [ -86.817, 33.430923 ], [ -86.816988, 33.429963 ], [ -86.817113, 33.429844 ], [ -86.81787, 33.429842 ], [ -86.819472, 33.42801 ], [ -86.819636, 33.427433 ], [ -86.820477, 33.42805 ], [ -86.822167, 33.42982 ], [ -86.823349, 33.431704 ], [ -86.822453, 33.43276 ] ] ] } },

binder/data/testpoint.csv

@@ -997,4 +997,4 @@
 997.1,1097.1
 998.1,1098.1
 999.1,1099.1
-1000.1,1100.1
+1000.1,1100.1

binder/postBuild

@@ -9,4 +9,4 @@ curl https://repo1.maven.org/maven2/org/apache/hadoop/hadoop-aws/${hadoop_s3_ver
 curl https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-bundle/${aws_sdk_version}/aws-java-sdk-bundle-${aws_sdk_version}.jar -o $HOME/spark-3.4.0-bin-hadoop3/jars/aws-java-sdk-bundle-${aws_sdk_version}.jar
 
 #Tidy up
-rm spark-3.4.0-bin-hadoop3.tgz
+rm spark-3.4.0-bin-hadoop3.tgz

binder/start

@@ -5,4 +5,4 @@ export PATH=$SPARK_HOME/bin:$PATH
 export PYTHONPATH=$SPARK_HOME/python:$PYTHONPATH
 export PYSPARK_SUBMIT_ARGS="--master local[*] pyspark-shell"
 
-exec "$@"
+exec "$@"

docker/sedona-spark-jupyterlab/.dockerignore

@@ -1,3 +1,3 @@
 Dockerfile
 compose.yml
-README.md
+README.md

docker/sedona-spark-jupyterlab/.gitignore

@@ -3,4 +3,4 @@ docker-compose-orig.yml
 Dockerfile.bak
 log.txt
 examples
-.ipynb_checkpoints
+.ipynb_checkpoints

docker/sedona-spark-jupyterlab/sedona-jupyterlab.dockerfile

@@ -70,4 +70,4 @@ EXPOSE 4040
 
 WORKDIR ${SHARED_WORKSPACE}
 
-CMD service ssh start && ${SPARK_HOME}/sbin/start-all.sh && jupyter lab --ip=0.0.0.0 --port=8888 --no-browser --allow-root --NotebookApp.token=
+CMD service ssh start && ${SPARK_HOME}/sbin/start-all.sh && jupyter lab --ip=0.0.0.0 --port=8888 --no-browser --allow-root --NotebookApp.token=

docs/community/discord-invite-form.html

@@ -146,4 +146,4 @@
 
 
 <!-- END - We recommend to place the above code in footer or bottom of your website html  -->
-<!-- End Brevo Form -->
+<!-- End Brevo Form -->

examples/flink-sql/.gitignore

@@ -1,3 +1,3 @@
 /target/
 /.idea/
-/spark-warehouse/
+/spark-warehouse/

examples/flink-sql/pom.xml

@@ -230,4 +230,3 @@
         </resources>
     </build>
 </project>
-

examples/flink-sql/src/test/resources/testenvelope.csv

@@ -997,4 +997,4 @@
 997.01,1097.01,997.5,1097.5
 998.01,1098.01,998.5,1098.5
 999.01,1099.01,999.5,1099.5
-1000.01,1100.01,1000.5,1100.5
+1000.01,1100.01,1000.5,1100.5

examples/flink-sql/src/test/resources/testpoint.csv

@@ -997,4 +997,4 @@
 997.1,1097.1
 998.1,1098.1
 999.1,1099.1
-1000.1,1100.1
+1000.1,1100.1

examples/spark-rdd-colocation-mining/build.sbt

@@ -83,4 +83,4 @@ resolvers ++= Seq(
   "Open Source Geospatial Foundation Repository" at "https://repo.osgeo.org/repository/release/",
   "Apache Software Foundation Snapshots" at "https://repository.apache.org/content/groups/snapshots",
   "Java.net repository" at "https://download.java.net/maven/2"
-)
+)

examples/spark-rdd-colocation-mining/project/build.properties

@@ -1 +1 @@
-sbt.version = 1.5.5
+sbt.version = 1.5.5

examples/spark-rdd-colocation-mining/project/plugins.sbt

@@ -1 +1 @@
-addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")
+addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")

examples/spark-rdd-colocation-mining/src/test/resources/nyc-area-landmark-shapefile/nyu_2451_34514.cst

@@ -1 +1 @@
-ISO-8859-1
+ISO-8859-1

examples/spark-rdd-colocation-mining/src/test/resources/nyc-area-landmark-shapefile/nyu_2451_34514.prj

@@ -1 +1 @@
-GEOGCS["WGS 84", DATUM["World Geodetic System 1984", SPHEROID["WGS 84", 6378137.0, 298.257223563, AUTHORITY["EPSG","7030"]], AUTHORITY["EPSG","6326"]], PRIMEM["Greenwich", 0.0, AUTHORITY["EPSG","8901"]], UNIT["degree", 0.017453292519943295], AXIS["Geodetic longitude", EAST], AXIS["Geodetic latitude", NORTH], AUTHORITY["EPSG","4326"]]
+GEOGCS["WGS 84", DATUM["World Geodetic System 1984", SPHEROID["WGS 84", 6378137.0, 298.257223563, AUTHORITY["EPSG","7030"]], AUTHORITY["EPSG","6326"]], PRIMEM["Greenwich", 0.0, AUTHORITY["EPSG","8901"]], UNIT["degree", 0.017453292519943295], AXIS["Geodetic longitude", EAST], AXIS["Geodetic latitude", NORTH], AUTHORITY["EPSG","4326"]]

examples/spark-sql/.gitignore

@@ -1,3 +1,3 @@
 /target/
 /.idea/
-/spark-warehouse/
+/spark-warehouse/

examples/spark-sql/build.sbt

@@ -83,4 +83,4 @@ resolvers ++= Seq(
   "Open Source Geospatial Foundation Repository" at "https://repo.osgeo.org/repository/release/",
   "Apache Software Foundation Snapshots" at "https://repository.apache.org/content/groups/snapshots",
   "Java.net repository" at "https://download.java.net/maven/2"
-)
+)

examples/spark-sql/project/build.properties

@@ -1 +1 @@
-sbt.version = 1.5.5
+sbt.version = 1.5.5

examples/spark-sql/project/plugins.sbt

@@ -1 +1 @@
-addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")
+addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")

examples/spark-sql/src/test/resources/testenvelope.csv

@@ -997,4 +997,4 @@
 997.01,1097.01,997.5,1097.5
 998.01,1098.01,998.5,1098.5
 999.01,1099.01,999.5,1099.5
-1000.01,1100.01,1000.5,1100.5
+1000.01,1100.01,1000.5,1100.5

examples/spark-sql/src/test/resources/testpoint.csv

@@ -997,4 +997,4 @@
 997.1,1097.1
 998.1,1098.1
 999.1,1099.1
-1000.1,1100.1
+1000.1,1100.1

examples/spark-viz/.gitignore

@@ -1,2 +1,2 @@
 /.idea/
-/target/
+/target/

examples/spark-viz/build.sbt

@@ -83,4 +83,4 @@ resolvers ++= Seq(
   "Open Source Geospatial Foundation Repository" at "https://repo.osgeo.org/repository/release/",
   "Apache Software Foundation Snapshots" at "https://repository.apache.org/content/groups/snapshots",
   "Java.net repository" at "https://download.java.net/maven/2"
-)
+)

examples/spark-viz/project/build.properties

@@ -1 +1 @@
-sbt.version = 1.5.5
+sbt.version = 1.5.5

examples/spark-viz/project/plugins.sbt

@@ -1 +1 @@
-addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")
+addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "1.1.0")

examples/spark-viz/src/test/resources/arealm.csv

@@ -121957,4 +121957,4 @@
 -64.876463,18.360521
 -64.703536,17.748556
 -64.749334,17.787033
--64.655374,17.765658
+-64.655374,17.765658

examples/spark-viz/src/test/resources/babylon.point.properties

@@ -6,4 +6,4 @@ gridType=rtree
 indexType=rtree
 numPartitions=5
 distance=0.01
-queryPolygonSet=primaryroads-polygon.csv
+queryPolygonSet=primaryroads-polygon.csv

examples/spark-viz/src/test/resources/babylon.polygon.properties

@@ -6,4 +6,4 @@ gridType=rtree
 indexType=rtree
 numPartitions=5
 distance=0.01
-queryPolygonSet=primaryroads-polygon.csv
+queryPolygonSet=primaryroads-polygon.csv

examples/spark-viz/src/test/resources/babylon.rectangle.properties

@@ -6,4 +6,4 @@ gridType=rtree
 indexType=rtree
 numPartitions=5
 distance=0.01
-queryPolygonSet=primaryroads-polygon.csv
+queryPolygonSet=primaryroads-polygon.csv

flink/pom.xml

@@ -140,4 +140,3 @@
         </dependency>
     </dependencies>
 </project>
-

licenses/LICENSE-Chicago-Crimes

@@ -30,4 +30,4 @@ The City reserves the right to discontinue availability of content on this websi
 
 INDEMNITY
 
-To the fullest extent permitted by law, any user of the data provided at this website shall indemnify and hold harmless the City from any claim, loss, damage, injury, or liability of any kind (including, without limitation, incidental and consequential damages, court costs, attorney’s fees and costs of investigation), that arises directly or indirectly, in whole or in part, from that user’s use of this data, including any secondary or derivative use of the information provided herein.  Every user of this data also specifically acknowledges and agrees to have an immediate and independent obligation to defend the City from any claim that may fall within this indemnification provision, even if the allegations are or may be groundless, false or fraudulent, which obligation arises at the time such claim is tendered to the user by the City and continues at all times thereafter.
+To the fullest extent permitted by law, any user of the data provided at this website shall indemnify and hold harmless the City from any claim, loss, damage, injury, or liability of any kind (including, without limitation, incidental and consequential damages, court costs, attorney’s fees and costs of investigation), that arises directly or indirectly, in whole or in part, from that user’s use of this data, including any secondary or derivative use of the information provided herein.  Every user of this data also specifically acknowledges and agrees to have an immediate and independent obligation to defend the City from any claim that may fall within this indemnification provision, even if the allegations are or may be groundless, false or fraudulent, which obligation arises at the time such claim is tendered to the user by the City and continues at all times thereafter.

licenses/LICENSE-pygeos

@@ -26,4 +26,4 @@ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

licenses/LICENSE-us-census-bureau

@@ -38,4 +38,4 @@ U.S. Census Bureau
 4600 Silver Hill Road
 Washington, DC 20233-7400
 Office: (301) 763-1128
-E-mail: geo.geography@census.gov
+E-mail: geo.geography@census.gov

python/tests/sql/resource/sample_lines

@@ -24,4 +24,4 @@ LINESTRING(-112.410513 42.660931,-112.410513 42.839601,-112.211424 42.839601,-11
 LINESTRING(-116.473529 43.593286,-116.473529 43.596943,-116.363919 43.596943,-116.363919 43.593286)
 LINESTRING(-99.328912 43.802971,-99.328912 43.808567,-99.313889 43.808567,-99.313889 43.802971)
 LINESTRING(-112.411042 42.660929,-112.411042 42.839979,-112.211798 42.839979,-112.211798 42.660929)
-LINESTRING(-112.410513 42.660931,-112.410513 42.839601,-112.211424 42.839601,-112.211424 42.660931)
+LINESTRING(-112.410513 42.660931,-112.410513 42.839601,-112.211424 42.839601,-112.211424 42.660931)

python/tests/sql/resource/sample_points

@@ -17,4 +17,4 @@ POINT(32.052598 -87.251219)
 POINT(31.934442 -87.534883)
 POINT(31.894541 -87.49702)
 POINT(33.325473 -88.280149)
-POINT(33.261297 -88.153618)
+POINT(33.261297 -88.153618)

python/tests/sql/resource/simple_polygons

@@ -1 +1 @@
-POLYGON ((0 0, 0 1, 1 1, 1 0, 0 0))
+POLYGON ((0 0, 0 1, 1 1, 1 0, 0 0))

spark/common/src/main/resources/META-INF/services/org.apache.spark.sql.sources.DataSourceRegister

@@ -1 +1 @@
-org.apache.spark.sql.sedona_sql.io.raster.RasterFileFormat
+org.apache.spark.sql.sedona_sql.io.raster.RasterFileFormat

spark/spark-3.0/src/main/resources/META-INF/services/org.apache.spark.sql.sources.DataSourceRegister

@@ -1 +1 @@
-org.apache.spark.sql.execution.datasources.parquet.GeoParquetFileFormat
+org.apache.spark.sql.execution.datasources.parquet.GeoParquetFileFormat

spark/spark-3.4/src/main/resources/META-INF/services/org.apache.spark.sql.sources.DataSourceRegister

@@ -1 +1 @@
-org.apache.spark.sql.execution.datasources.parquet.GeoParquetFileFormat
+org.apache.spark.sql.execution.datasources.parquet.GeoParquetFileFormat

zeppelin/.gitignore

@@ -1,3 +1,3 @@
 sedona-zeppelin.json
 node_modules
-.idea
+.idea