This is my collection of rnaseq tools
scripts/ - python classes that wrap RNAseq tools/programs bin/ - scripts that use python classes to create qsub scripts templates/ - mako template for the qsub script
So far, I have classes that will handle these aligners
- Tophat2
- Cufflinks/Cuffquant
- featureCount (subread)
- kallisto
- salmon
- STAR
- SpliceTrap
- indexes (aligner index files)