Deployment Failure Due to Nokogiri Gem Incompatibility with Ruby 3.2.2

[deepjyotk]

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• I read through FAQ and searched through the past issues, none of which addressed my issue.
• Yes, I have checked that this issue isn't already filed.

Bug description

During deployment, the build process fails while attempting to install gems via Bundler. The failure occurs because the nokogiri gem (version 1.13.10-x86_64-linux) has a requirement of Ruby < 3.2.dev, >= 2.6, which is incompatible with the current Ruby version 3.2.2. As a result, the deployment is halted with an exit code 5.

How to reproduce the bug

• Push the code to github

Error messages and logs

`Run ruby/setup-ruby@v1
Modifying PATH
Downloading Ruby
Extracting Ruby
Print Ruby version
Installing Bundler

bundle install
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle config --local path /home/runner/work/deepjyotk.github.io/deepjyotk.github.io/vendor/bundle
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle config --local deployment true
Cache key: setup-ruby-bundler-cache-v6-ubuntu-22.04-x64-ruby-3.2.2-wd-/home/runner/work/deepjyotk.github.io/deepjyotk.github.io-with--without--only--Gemfile.lock-0deeb3d141a9828c8aa70d15dddc9183df3ab5dddf9811b6a988bb4f3066ca73
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle install --jobs 4
Fetching gem metadata from https://rubygems.org/.......
nokogiri-1.13.10-x86_64-linux requires ruby version < 3.2.dev, >= 2.6, which is
incompatible with the current version, 3.2.2
Error: The process '/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle' failed with exit code 5`

Gemfile currently used

`GEM
remote: https://rubygems.org/
specs:
activesupport (7.1.3.4)
base64
bigdecimal
concurrent-ruby (> 1.0, >= 1.0.2)
connection_pool (>= 2.2.5)
drb
i18n (>= 1.6, < 2)
minitest (>= 5.1)
mutex_m
tzinfo (> 2.0)
addressable (2.8.7)
public_suffix (>= 2.0.2, < 7.0)
base64 (0.2.0)
bibtex-ruby (6.1.0)
latex-decode (> 0.0)
racc (> 1.7)
bigdecimal (3.1.8)
citeproc (1.0.10)
namae (> 1.0)
citeproc-ruby (1.1.14)
citeproc (> 1.0, >= 1.0.9)
csl (> 1.6)
classifier-reborn (2.3.0)
fast-stemmer (> 1.0)
matrix (> 0.4)
colorator (1.1.0)
concurrent-ruby (1.3.4)
connection_pool (2.4.1)
crass (1.0.6)
csl (1.6.0)
namae (> 1.0)
rexml
csl-styles (1.0.1.11)
csl (> 1.0)
css_parser (1.17.1)
addressable
cssminify2 (2.0.1)
csv (3.3.0)
deep_merge (1.2.2)
drb (2.2.1)
em-websocket (0.5.3)
eventmachine (>= 0.12.9)
http_parser.rb (> 0)
eventmachine (1.2.7)
execjs (2.9.1)
fast-stemmer (1.0.2)
feedjira (3.2.1)
loofah (>= 2.3.1)
sax-machine (>= 1.0)
ffi (1.17.0)
forwardable-extended (2.6.0)
gemoji (4.1.0)
html-pipeline (2.14.3)
activesupport (>= 2)
nokogiri (>= 1.4)
htmlcompressor (0.4.0)
http_parser.rb (0.8.0)
httparty (0.22.0)
csv
mini_mime (>= 1.0.0)
multi_xml (>= 0.5.2)
i18n (1.14.5)
concurrent-ruby (> 1.0)
jekyll (4.3.3)
addressable (> 2.4)
colorator (> 1.0)
em-websocket (> 0.5)
i18n (> 1.0)
jekyll-sass-converter (>= 2.0, < 4.0)
jekyll-watch (> 2.0)
kramdown (> 2.3, >= 2.3.1)
kramdown-parser-gfm (> 1.0)
liquid (> 4.0)
mercenary (>= 0.3.6, < 0.5)
pathutil (> 0.9)
rouge (>= 3.0, < 5.0)
safe_yaml (> 1.0)
terminal-table (>= 1.8, < 4.0)
webrick (> 1.7)
jekyll-archives (2.2.1)
jekyll (>= 3.6, < 5.0)
jekyll-email-protect (1.1.0)
jekyll-feed (0.17.0)
jekyll (>= 3.7, < 5.0)
jekyll-get-json (1.0.0)
deep_merge (> 1.2)
jekyll (>= 3.0)
jekyll-imagemagick (1.4.0)
jekyll (>= 3.4)
jekyll-jupyter-notebook (0.0.6)
jekyll
jekyll-link-attributes (1.0.1)
jekyll-minifier (0.1.10)
cssminify2 (> 2.0)
htmlcompressor (> 0.4)
jekyll (>= 3.5)
json-minify (> 0.0.3)
uglifier (> 4.1)
jekyll-paginate-v2 (3.0.0)
jekyll (>= 3.0, < 5.0)
jekyll-regex-replace (1.1.0)
jekyll-sass-converter (2.2.0)
sassc (> 2.0.1, < 3.0)
jekyll-scholar (7.1.3)
bibtex-ruby (> 6.0)
citeproc-ruby (> 1.0)
csl-styles (> 1.0)
jekyll (> 4.0)
jekyll-sitemap (1.4.0)
jekyll (>= 3.7, < 5.0)
jekyll-tabs (1.2.1)
jekyll (>= 3.0, < 5.0)
jekyll-toc (0.18.0)
jekyll (>= 3.9)
nokogiri (> 1.12)
jekyll-twitter-plugin (2.1.0)
jekyll-watch (2.2.1)
listen (> 3.0)
jemoji (0.13.0)
gemoji (>= 3, < 5)
html-pipeline (> 2.2)
jekyll (>= 3.0, < 5.0)
json (2.7.2)
json-minify (0.0.3)
json (> 0)
kramdown (2.4.0)
rexml
kramdown-parser-gfm (1.1.0)
kramdown (> 2.0)
latex-decode (0.4.0)
libv8-node (22.5.1.0-aarch64-linux)
libv8-node (22.5.1.0-arm64-darwin)
libv8-node (22.5.1.0-x86_64-linux)
liquid (4.0.4)
listen (3.9.0)
rb-fsevent (> 0.10, >= 0.10.3)
rb-inotify (> 0.9, >= 0.9.10)
loofah (2.22.0)
crass (> 1.0.2)
nokogiri (>= 1.12.0)
matrix (0.4.2)
mercenary (0.4.0)
mini_mime (1.1.5)
mini_racer (0.13.0)
libv8-node (> 22.5.1.0)
minitest (5.24.1)
multi_xml (0.7.1)
bigdecimal (> 3.1)
mutex_m (0.2.0)
namae (1.2.0)
racc (> 1.7)
nokogiri (1.13.10-aarch64-linux)
racc (> 1.4)
nokogiri (1.13.10-arm64-darwin)
racc (> 1.4)
nokogiri (1.13.10-x86_64-linux)
racc (> 1.4)
pathutil (0.16.2)
forwardable-extended (> 2.6)
public_suffix (6.0.1)
racc (1.8.1)
rb-fsevent (0.11.2)
rb-inotify (0.11.1)
ffi (> 1.0)
rexml (3.3.6)
rouge (4.3.0)
safe_yaml (1.0.5)
sassc (2.4.0)
ffi (> 1.9)
sax-machine (1.3.2)
terminal-table (3.0.2)
unicode-display_width (>= 1.1.1, < 3)
tzinfo (2.0.6)
concurrent-ruby (> 1.0)
uglifier (4.2.0)
execjs (>= 0.3.0, < 3)
unicode-display_width (2.5.0)
unicode_utils (1.4.0)
webrick (1.8.1)

PLATFORMS
aarch64-linux
arm64-darwin-23
x86_64-linux

DEPENDENCIES
classifier-reborn
css_parser
feedjira
httparty
jekyll
jekyll-archives
jekyll-email-protect
jekyll-feed
jekyll-get-json
jekyll-imagemagick
jekyll-jupyter-notebook
jekyll-link-attributes
jekyll-minifier
jekyll-paginate-v2
jekyll-regex-replace
jekyll-scholar
jekyll-sitemap
jekyll-tabs
jekyll-toc
jekyll-twitter-plugin
jemoji
mini_racer
unicode_utils
webrick

BUNDLED WITH
2.4.22
`

What operating system are you using?

Mac

Where are you seeing the problem on?

Deployed site

More info

The application runs locally with Docker without issues, but the CI/CD pipeline fails after committing the code

[jeremy-lilly]

I'm running into what looks like a similar problem:

> bundle install
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle config --local path /home/runner/work/jeremy-lilly.github.io/jeremy-lilly.github.io/vendor/bundle
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle config --local deployment true
Cache key: setup-ruby-bundler-cache-v6-ubuntu-22.04-x64-ruby-3.2.2-wd-/home/runner/work/jeremy-lilly.github.io/jeremy-lilly.github.io-with--without--only--Gemfile.lock-c8c4a1fadd8ba5710d76a64ab6e38f9b10389ef70fa2d7fb980570793d8c5d9f
/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle install --jobs 4
Fetching gem metadata from https://rubygems.org/.......
Fetching rake 13.2.1
Installing rake 13.2.1
.
.
.
Fetching unicode_utils 1.4.0
Installing unicode_utils 1.4.0
Fetching addressable 2.8.6
Installing addressable 2.8.6
Downloading rexml-3.2.8 revealed dependencies not in the API or the lockfile
(strscan (>= 3.0.9)).
Running `bundle update rexml` should fix the problem.
Error: The process '/opt/hostedtoolcache/Ruby/3.2.2/x64/bin/bundle' failed with exit code 34

[george-gca]

Apparently @deepjyotk fixed its issue. Can you share your solution?

@jeremy-lilly I see that you pushed a very huge commit with lots of changes. It is best practice to push small commits, so it is easier to pinpoint which change introduced the error.

[deepjyotk]

Hey @george-gca, I've downgraded my gemfile.lock and it got fixed.

[george-gca]

After your site is up and running, you can upgrade your Gemfile.lock by doing a bundle update then commiting the new Gemfile.lock. Remember to test commiting ONLY this file to make sure it is the cause of some unexpected error when deploying the site.

Also note that to build the site we are currently using

al-folio/.github/workflows/deploy.yml

Line 73 in b30b3f4

ruby-version: "3.2.2"

so if you update your Gems to use a different ruby version you should also update this in all workflows.

[jeremy-lilly]

@george-gca, running bundle update and committing the new Gemfile.lock fixed this for me. Thanks!