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Configuration overhaul #2

@favyen2

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@favyen2

Figure out how configuration files and loading config from them should work.

Right now some configuration loads arguments to a constructor directly (e.g. loading data source), while others have dedicated parsing functions.

Look into best practices but I think sticking with a function to parse the configuration into a class is good.

Dataset should store config as DatasetConfig or similar rather than keeping the decoded JSON dict.

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