Skip to content
View alisterburt's full-sized avatar

Organizations

@teamtomo

Block or report alisterburt

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
alisterburt/README.md
πŸ™ƒ Alister Burt                                                                                     
┣━━ πŸ”¬ Research Interests                                                                           
┃   ┣━━ cryo-electron tomography - enabling in situ protein structure determination                 
┃   ┗━━ bacterial chemotaxis - how bacteria sense and respond to nutrients/toxins                   
┣━━ πŸ“¦ Open Source Packages                                                                         
┃   ┣━━ napari - n-dimensional data visualisation in Python                                         
┃   ┣━━ blik - browse cryo-ET data and annotations in napari                                        
┃   ┣━━ napari-animation - make animations in napari                                                
┃   ┣━━ dynamo2m - combine dynamo and warp/relion/m                                                 
┃   ┣━━ eulerangles - fast conversion of large sets of Euler angles                                 
┃   ┗━━ starfile - STAR file IO in Python                                                           
┣━━ ⭐ Web Projects                                                                              
┃   ┗━━ teamtomo.org   - cryo-ET knowledge platform                                                 
┣━━ πŸŽ™οΈ Teaching                                                                                      
┃   ┣━━ EMBO image processing for cryo electron microscopy                                          
┃   ┣━━ EMBO advanced methods in bioimage analysis                                                  
┃   ┣━━ EMBO cryo-electron microscopy and 3D image processing                                       
┃   ┣━━ Dynamo workshop - Basel, CH                                                                 
┃   ┣━━ Intro to bioinformatics - UniversitΓ© Grenoble Alpes                                         
┃   ┗━━ Multidisciplinary experimental methods - UniversitΓ© Grenoble Alpes                          
┗━━ πŸ‘¨β€πŸ’» Employer                                                                                   
    ┣━━ MRC-LMB - Postdoc in David Barford's group                                                  
    ┗━━ ⏰ Previously...                                                                            
        ┣━━ CCP-EM - collaborative computational project for electron microscopy                    
        ┗━━ Institut de Biologie Structurale - PhD student in Irina Gutsche's group
        ┣━━ Diamond Light Source - Intern on B24                                                    
        ┗━━ CHyM - Intern                           

Follow me on twitter @AlisterBurt

Pinned Loading

  1. napari/napari-animation napari/napari-animation Public

    A napari plugin for making animations

    Python 79 27

  2. napari/napari napari/napari Public

    napari: a fast, interactive, multi-dimensional image viewer for python

    Python 2.2k 422

  3. napari-subboxer napari-subboxer Public

    Python 3 2

  4. teamtomo/starfile teamtomo/starfile Public

    STAR file I/O in Python

    Python 46 19

  5. napari-mrcfile-reader napari-mrcfile-reader Public

    Read MRC format image files into napari using the mrcfile package from CCP-EM

    Python 18 6

  6. teamtomo/fidder teamtomo/fidder Public

    Detect and erase gold fiducials in cryo-EM images

    Python 11 4