-
Notifications
You must be signed in to change notification settings - Fork 1
/
day5_1b_output.xml
153 lines (153 loc) · 10.4 KB
/
day5_1b_output.xml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
<BlastOutput_program>blastp</BlastOutput_program>
<BlastOutput_version>BLASTP 2.12.0+</BlastOutput_version>
<BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
<BlastOutput_db>nr</BlastOutput_db>
<BlastOutput_query-ID>Query_20299</BlastOutput_query-ID>
<BlastOutput_query-def>unnamed protein product</BlastOutput_query-def>
<BlastOutput_query-len>243</BlastOutput_query-len>
<BlastOutput_param>
<Parameters>
<Parameters_matrix>BLOSUM62</Parameters_matrix>
<Parameters_expect>10</Parameters_expect>
<Parameters_gap-open>11</Parameters_gap-open>
<Parameters_gap-extend>1</Parameters_gap-extend>
<Parameters_filter>F</Parameters_filter>
</Parameters>
</BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
<Iteration_iter-num>1</Iteration_iter-num>
<Iteration_query-ID>Query_20299</Iteration_query-ID>
<Iteration_query-def>unnamed protein product</Iteration_query-def>
<Iteration_query-len>243</Iteration_query-len>
<Iteration_hits>
<Hit>
<Hit_num>1</Hit_num>
<Hit_id>gb|ETJ08129.1|</Hit_id>
<Hit_def>rRNA adenine N-6-methyltransferase, partial [Streptococcus parasanguinis DORA_23_24]</Hit_def>
<Hit_accession>ETJ08129</Hit_accession>
<Hit_len>247</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>497.278</Hsp_bit-score>
<Hsp_score>1279</Hsp_score>
<Hsp_evalue>2.47923e-177</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>243</Hsp_query-to>
<Hsp_hit-from>5</Hsp_hit-from>
<Hsp_hit-to>247</Hsp_hit-to>
<Hsp_query-frame>0</Hsp_query-frame>
<Hsp_hit-frame>0</Hsp_hit-frame>
<Hsp_identity>243</Hsp_identity>
<Hsp_positive>243</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>243</Hsp_align-len>
<Hsp_qseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_qseq>
<Hsp_hseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_hseq>
<Hsp_midline>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>2</Hit_num>
<Hit_id>gb|EXM57106.1|</Hit_id>
<Hit_def>rRNA adenine N-6-methyltransferase [Staphylococcus aureus DAR133]</Hit_def>
<Hit_accession>EXM57106</Hit_accession>
<Hit_len>264</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>497.664</Hsp_bit-score>
<Hsp_score>1280</Hsp_score>
<Hsp_evalue>2.55549e-177</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>243</Hsp_query-to>
<Hsp_hit-from>22</Hsp_hit-from>
<Hsp_hit-to>264</Hsp_hit-to>
<Hsp_query-frame>0</Hsp_query-frame>
<Hsp_hit-frame>0</Hsp_hit-frame>
<Hsp_identity>243</Hsp_identity>
<Hsp_positive>243</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>243</Hsp_align-len>
<Hsp_qseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_qseq>
<Hsp_hseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_hseq>
<Hsp_midline>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>3</Hit_num>
<Hit_id>ref|WP_001072201.1|</Hit_id>
<Hit_def>MULTISPECIES: 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Bacilli] >sp|P0A0H1.1| RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein [Staphylococcus aureus subsp. aureus Mu50] >sp|P0A0H2.1| RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein [Staphylococcus aureus subsp. aureus N315] >sp|P0A0H3.1| RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein [Staphylococcus aureus] >sp|Q6GKQ0.1| RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin B resistance protein [Staphylococcus aureus subsp. aureus MRSA252] >gb|EGO8568860.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Enterococcus faecalis] >gb|EGP5183003.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Enterococcus hirae] >gb|EHS14301.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus IS-99] >gb|EHS72760.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus IS-125] >gb|EHS75181.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus subsp. aureus IS-189] >gb|ENK62286.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus M0562] >gb|EUY42749.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus M0406] >gb|MBD4026367.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Staphylococcus aureus] >emb|CBA13539.1| adenine methylase [Staphylococcus rostri] >emb|CBY88979.1| rRNA methylase [Staphylococcus aureus subsp. aureus ST398] >tpg|HAR4218314.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Staphylococcus aureus ADL-227] >tpg|HAR4232287.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Staphylococcus aureus ADL-331] >tpg|HAR4238652.1| 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) [Staphylococcus aureus ADL-330]</Hit_def>
<Hit_accession>WP_001072201</Hit_accession>
<Hit_len>243</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>496.508</Hsp_bit-score>
<Hsp_score>1277</Hsp_score>
<Hsp_evalue>3.6655e-177</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>243</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
<Hsp_hit-to>243</Hsp_hit-to>
<Hsp_query-frame>0</Hsp_query-frame>
<Hsp_hit-frame>0</Hsp_hit-frame>
<Hsp_identity>243</Hsp_identity>
<Hsp_positive>243</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>243</Hsp_align-len>
<Hsp_qseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_qseq>
<Hsp_hseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_hseq>
<Hsp_midline>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>4</Hit_num>
<Hit_id>gb|ALY18984.1|</Hit_id>
<Hit_def>rRNA adenine N-6-methyltransferase [Staphylococcus aureus] >gb|EUQ74542.1| rRNA adenine N-6-methyltransferase [Staphylococcus aureus FVRH6001]</Hit_def>
<Hit_accession>ALY18984</Hit_accession>
<Hit_len>244</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>496.508</Hsp_bit-score>
<Hsp_score>1277</Hsp_score>
<Hsp_evalue>3.8443e-177</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>243</Hsp_query-to>
<Hsp_hit-from>2</Hsp_hit-from>
<Hsp_hit-to>244</Hsp_hit-to>
<Hsp_query-frame>0</Hsp_query-frame>
<Hsp_hit-frame>0</Hsp_hit-frame>
<Hsp_identity>243</Hsp_identity>
<Hsp_positive>243</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>243</Hsp_align-len>
<Hsp_qseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_qseq>
<Hsp_hseq>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_hseq>
<Hsp_midline>MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
</Iteration_hits>
<Iteration_stat>
<Statistics>
<Statistics_db-num>415939722</Statistics_db-num>
<Statistics_db-len>953964019</Statistics_db-len>
<Statistics_hsp-len>0</Statistics_hsp-len>
<Statistics_eff-space>0</Statistics_eff-space>
<Statistics_kappa>0.041</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
</Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>