You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Jan 8, 2021. It is now read-only.
18/03/26 00:27:02 ERROR Executor: Exception in task 10.0 in stage 8.0 (TID 37)
java.lang.NoClassDefFoundError: Could not initialize class ml.dmlc.xgboost4j.java.XGBoostJNI
at ml.dmlc.xgboost4j.java.DMatrix.(DMatrix.java:53)
at ml.dmlc.xgboost4j.scala.DMatrix.(DMatrix.scala:42)
at org.aertslab.grnboost.util.ExpressionCSCMatrixFunctions.iterateToLabeledDMatrix(Breez
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated$$anonfun$apply$2.apply(Es
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated$$anonfun$apply$2.apply(Es
at scala.Option.map(Option.scala:146)
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated.apply(EstimateNrBoostingR
at org.aertslab.grnboost.GRNBoost$$anonf$$$$b53fb875fb4ddc549756c9a3b3bacf8$$$$st$$mapTa
at org.aertslab.grnboost.GRNBoost$$anonf$$$$b53fb875fb4ddc549756c9a3b3bacf8$$$$st$$mapTa
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggr
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNex
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:4
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(Whole
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuff
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47)
at org.apache.spark.scheduler.Task.run(Task.scala:86)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
The text was updated successfully, but these errors were encountered:
Sign up for freeto subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Hi, i meet the following error when runing the GRNBOOST with the
spark-submit
--class org.aertslab.grnboost.GRNBoost
--master local[*]
--deploy-mode client
--jars /home/XXX/.m2/repository/ml/dmlc/xgboost4j/0.8-SNAPSHOT/xgboost4j-0.8-SNAPSHOT.jar
/datb1/wangrui/software/GRNBoost/target/scala-2.11/GRNBoost.jar
infer -i /datb1/XXX/test.txt
-tf /datb1/XXX/mm_only_TF.xls
-o /datb1/XXX/net1_grnboost_depth3.tsv
-p eta=0.01
-p max_depth=3
-p colsample_bytree=0.1
--truncate 100000
the test.txt:
#####################
Tspan12 0 0.666 0 0 0.089
Gad1 1.800 0 0 0.061 0
Neurod1 0 0 1.301 0.232 0
#######################
18/03/26 00:27:02 ERROR Executor: Exception in task 10.0 in stage 8.0 (TID 37)
java.lang.NoClassDefFoundError: Could not initialize class ml.dmlc.xgboost4j.java.XGBoostJNI
at ml.dmlc.xgboost4j.java.DMatrix.(DMatrix.java:53)
at ml.dmlc.xgboost4j.scala.DMatrix.(DMatrix.scala:42)
at org.aertslab.grnboost.util.ExpressionCSCMatrixFunctions.iterateToLabeledDMatrix(Breez
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated$$anonfun$apply$2.apply(Es
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated$$anonfun$apply$2.apply(Es
at scala.Option.map(Option.scala:146)
at org.aertslab.grnboost.algo.EstimateNrBoostingRoundsIterated.apply(EstimateNrBoostingR
at org.aertslab.grnboost.GRNBoost$$anonf$$$$b53fb875fb4ddc549756c9a3b3bacf8$$$$st$$mapTa
at org.aertslab.grnboost.GRNBoost$$anonf$$$$b53fb875fb4ddc549756c9a3b3bacf8$$$$st$$mapTa
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggr
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNex
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:4
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(Whole
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuff
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47)
at org.apache.spark.scheduler.Task.run(Task.scala:86)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
The text was updated successfully, but these errors were encountered: