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MatthewMiddlehurstchrisholder
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[MNT,ENH] Update to allow Python 3.13 (#2608)
* python 3.13 * tensorflow * esig * tensorflow * tensorflow * esig and matrix profile * signature notebook * remove prts * fix * remove annoying deps from all_extras * Update pyproject.toml
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‎.github/actions/cpu_all_extras/action.yml‎

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@@ -2,6 +2,10 @@ name: Pip install all_extras with CPU versions
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description: "For CI testing install the CPU version of dependencies with all extras if on ubuntu"
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inputs:
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python_version:
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description: "Python version used"
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required: false
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default: "3.11"
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additional_extras:
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description: "Comma-separated list of additional extras to install"
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required: false
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using: "composite"
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steps:
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- name: Install CPU TensorFlow
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if: runner.os == 'Linux'
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if: ${{ runner.os == 'Linux' && inputs.python_version != '3.13' }}
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uses: nick-fields/retry@v3
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with:
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timeout_minutes: 30

‎.github/utilities/run_examples.sh‎

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@@ -6,7 +6,8 @@ set -euxo pipefail
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CMD="jupyter nbconvert --to notebook --inplace --execute --ExecutePreprocessor.timeout=600"
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excluded=(
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"examples/transformations/signature_method.ipynb"
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# try removing when 3.9 is dropped
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"examples/transformations/signature_method.ipynb"
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)
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if [ "$1" = true ]; then
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excluded+=(

‎.github/workflows/fast_release.yml‎

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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Build project
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run: |

‎.github/workflows/issue_assigned.yml‎

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with:
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sparse-checkout: .github/utilities
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install PyGithub
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run: pip install -Uq PyGithub

‎.github/workflows/issue_comment_edited.yml‎

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with:
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sparse-checkout: .github/utilities
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install PyGithub
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run: pip install -Uq PyGithub

‎.github/workflows/issue_comment_posted.yml‎

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with:
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sparse-checkout: .github/utilities
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install PyGithub
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run: pip install -Uq PyGithub

‎.github/workflows/periodic_tests.yml‎

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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Run check-manifest
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uses: pre-commit/action@v3.0.1
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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Run pre-commit
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uses: pre-commit/action@v3.0.1
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brew install bash
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/opt/homebrew/bin/bash --version
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Use numba cache to set env variables but not restore cache
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uses: ./.github/actions/numba_cache
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with:
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cache_name: "run-notebook-examples"
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runner_os: ${{ runner.os }}
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python_version: "3.10"
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python_version: "3.11"
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restore_cache: "false"
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- uses: ./.github/actions/cpu_all_extras
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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install aeon and dependencies
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uses: nick-fields/retry@v3
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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Use numba cache to set env variables but not restore cache
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uses: ./.github/actions/numba_cache
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with:
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cache_name: "test-no-soft-deps"
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runner_os: ${{ runner.os }}
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python_version: "3.10"
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python_version: "3.11"
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restore_cache: "false"
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- name: Install aeon and dependencies
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fail-fast: false
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matrix:
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os: [ ubuntu-24.04, macOS-14, windows-2022 ]
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python-version: [ "3.9", "3.10", "3.11", "3.12" ]
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python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
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steps:
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- name: Checkout
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- uses: ./.github/actions/cpu_all_extras
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with:
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python_version: ${{ matrix.python-version }}
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additional_extras: "dev"
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- name: Show dependencies
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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Disable Numba JIT
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run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV

‎.github/workflows/pr_core_dep_import.yml‎

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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install aeon and dependencies
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uses: nick-fields/retry@v3

‎.github/workflows/pr_examples.yml‎

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brew install bash
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/opt/homebrew/bin/bash --version
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- if: ${{ github.event_name != 'pull_request' || !contains(github.event.pull_request.labels.*.name, 'no numba cache') }}
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name: Restore numba cache
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uses: ./.github/actions/numba_cache
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with:
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cache_name: "run-notebook-examples"
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runner_os: ${{ runner.os }}
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python_version: "3.10"
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python_version: "3.11"
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- uses: ./.github/actions/cpu_all_extras
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with:

‎.github/workflows/pr_opened.yml‎

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sparse-checkout: .github/utilities
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- name: Setup Python 3.10
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- name: Setup Python 3.11
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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python-version: "3.11"
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- name: Install PyGithub
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run: pip install -Uq PyGithub

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