Merge pull request #70 from mohadesz/data_integrity

Data integrity

Author: driusan

SQL/0000-00-00-schema.sql

@@ -1013,7 +1013,7 @@ CREATE TABLE `permissions` (
 
 LOCK TABLES `permissions` WRITE;
 /*!40000 ALTER TABLE `permissions` DISABLE KEYS */;
-INSERT INTO `permissions` VALUES (1,'superuser','There can be only one Highlander','1'),(2,'user_accounts','User management','2'),(3,'user_accounts_multisite','Across all sites create and edit users','2'),(4,'context_help','Edit help documentation','2'),(5,'bvl_feedback','Behavioural QC','1'),(6,'mri_feedback','Edit MRI feedback threads','2'),(7,'mri_efax','Edit MRI Efax files','2'),(8,'send_to_dcc','Send to DCC','2'),(9,'unsend_to_dcc','Reverse Send from DCC','2'),(10,'access_all_profiles','Across all sites access candidate profiles','2'),(11,'data_entry','Data entry','1'),(12,'certification','Certify examiners','2'),(13,'certification_multisite','Across all sites certify examiners','2'),(14,'timepoint_flag','Edit exclusion flags','2'),(15,'timepoint_flag_evaluate','Evaluate overall exclusionary criteria for the timepoint','2'),(16,'mri_safety','Review MRI safety form for accidental findings','2'),(17,'conflict_resolver','Resolving conflicts','2'),(18,'data_dict','Parameter Type description','2'),(19,'violated_scans','Violated Scans','2'),(20,'violated_scans_modifications','Editing the MRI protocol table (Violated Scans moduleiolated Scans)','2');
+INSERT INTO `permissions` VALUES (1,'superuser','There can be only one Highlander','1'),(2,'user_accounts','User management','2'),(3,'user_accounts_multisite','Across all sites create and edit users','2'),(4,'context_help','Edit help documentation','2'),(5,'bvl_feedback','Behavioural QC','1'),(6,'mri_feedback','Edit MRI feedback threads','2'),(7,'mri_efax','Edit MRI Efax files','2'),(8,'send_to_dcc','Send to DCC','2'),(9,'unsend_to_dcc','Reverse Send from DCC','2'),(10,'access_all_profiles','Across all sites access candidate profiles','2'),(11,'data_entry','Data entry','1'),(12,'certification','Certify examiners','2'),(13,'certification_multisite','Across all sites certify examiners','2'),(14,'timepoint_flag','Edit exclusion flags','2'),(15,'timepoint_flag_evaluate','Evaluate overall exclusionary criteria for the timepoint','2'),(16,'mri_safety','Review MRI safety form for accidental findings','2'),(17,'conflict_resolver','Resolving conflicts','2'),(18,'data_dict','Parameter Type description','2'),(19,'violated_scans','Violated Scans','2'),(20,'violated_scans_modifications','Editing the MRI protocol table (Violated Scans module)','2'),(21,'data_integrity_flag','Data Integrity Flag','2');
 
 /*!40000 ALTER TABLE `permissions` ENABLE KEYS */;
 UNLOCK TABLES;
@@ -1640,9 +1640,6 @@ UNLOCK TABLES;
 
 -- Dump completed on 2012-08-21 16:13:53
 
---
--- Table structure for table `parameter_type_override`
---
 
 -- This table needs to be MyISAM because InnoDB doesn't
 -- support full text indexes
@@ -1667,6 +1664,50 @@ CREATE TABLE `help_related_links` (
 
 INSERT INTO help (helpID, topic, content) VALUES ('1','LORIS HELP: Using the Database','Welcome to LORIS database. The help section provides you with guidelines for adding and updating information in the database'), ('2','HOW TO - Guide','Under Construction.Please visit us later'), ('3','Guidelines','Under Construction.Please visit us later'), ('5','Instruments - Guide','Under Construction.Please visit us later');
 
+
+
+--
+-- Table structure for table `data_integrity_flag`
+--
+
+DROP TABLE IF EXISTS `data_integrity_flag`;
+/*!40101 SET @saved_cs_client     = @@character_set_client */;
+/*!40101 SET character_set_client = utf8 */;
+CREATE TABLE `data_integrity_flag` (
+  `dataflag_id` int(11) NOT NULL AUTO_INCREMENT,
+  `dataflag_visitlabel` varchar(255) NOT NULL,
+  `dataflag_instrument` varchar(255) NOT NULL,
+  `dataflag_date` date NOT NULL,
+  `dataflag_status` int(11) NOT NULL,
+  `dataflag_comment` text,
+  `latest_entry` tinyint(1) NOT NULL DEFAULT '1',
+  `dataflag_fbcreated` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbclosed` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbcomment` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbdeleted` int(11) NOT NULL DEFAULT '0',
+  `dataflag_userid` varchar(255) NOT NULL,
+  PRIMARY KEY (`dataflag_id`)
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+/*!40101 SET character_set_client = @saved_cs_client */;
+
+--
+-- Dumping data for table `data_integrity_flag`
+--
+
+LOCK TABLES `data_integrity_flag` WRITE;
+/*!40000 ALTER TABLE `data_integrity_flag` DISABLE KEYS */;
+/*!40000 ALTER TABLE `data_integrity_flag` ENABLE KEYS */;
+UNLOCK TABLES;
+/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */;
+
+/*!40101 SET SQL_MODE=@OLD_SQL_MODE */;
+/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */;
+/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */;
+/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */;
+/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */;
+/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
+/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
+
 CREATE TABLE `final_radiological_review` (
       `CommentID` varchar(255) NOT NULL,
       `Review_Done` tinyint(1) DEFAULT NULL,
@@ -1686,3 +1727,4 @@ CREATE TABLE `final_radiological_review` (
       `Finalized` tinyint(1) DEFAULT NULL,
       PRIMARY KEY (`CommentID`)
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+-- Dump completed on 2012-10-05 10:49:10

SQL/2012-10-05-data_integrity_table_creation.sql

@@ -0,0 +1,17 @@
+CREATE TABLE `data_integrity_flag` (
+  `dataflag_id` int(11) NOT NULL AUTO_INCREMENT,
+  `dataflag_visitlabel` varchar(255) NOT NULL,
+  `dataflag_instrument` varchar(255) NOT NULL,
+  `dataflag_date` date NOT NULL,
+  `dataflag_status` int(11) NOT NULL,
+  `dataflag_comment` text,
+  `latest_entry` tinyint(1) NOT NULL DEFAULT '1',
+  `dataflag_fbcreated` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbclosed` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbcomment` int(11) NOT NULL DEFAULT '0',
+  `dataflag_fbdeleted` int(11) NOT NULL DEFAULT '0',
+  `dataflag_userid` varchar(255) NOT NULL,
+  PRIMARY KEY (`dataflag_id`)
+);
+
+INSERT INTO permissions (code, description,type,categoryID) VALUES ('data_integrity_flag','Data Integrity Flag','permission','2');

docs/config/config.xml

@@ -255,6 +255,17 @@
           </permissions>
           <visible>1</visible>
         </tab>
+        <tab>
+          <link>data_integrity_flag</link>
+          <label>Data Integrity Flag</label>
+          <access>all</access>
+          <permissions>
+            <perm>
+                data_integrity_flag
+            </perm>
+          </permissions>
+          <visible>1</visible>
+        </tab>
         <ConflictResolver>
             <MaxConflicts>500</MaxConflicts>
         </ConflictResolver>

htdocs/GetInstruments.php

@@ -11,13 +11,14 @@
 $client->initialize();
 
 require_once "Utility.class.inc";
+
+
 //gets the given visit_label and returns the instrument
 
 
 
 $instruments = Utility::getVisitInstruments($_REQUEST['visit_label']);
 
-print "All Instruments\n";
 foreach($instruments as $instrument){
     print $instrument['Test_name_display'] . "\n";
 }

htdocs/js/modules/data_integrity_flag.js

@@ -0,0 +1,62 @@
+/*global document: false, $: false, window: false, unescape: false, Option: false*/
+
+function getQueryVariable(variable) {
+    "use strict";
+    var query = window.location.search.substring(1),
+        vars = query.split("&"),
+        i,
+        pair;
+    for (i = 0; i < vars.length; i += 1) {
+        pair = vars[i].split("=");
+        if (pair[0] === variable) {
+            return unescape(pair[1]);
+        }
+    }
+}
+
+function changeVisitLabels() {
+    "use strict";
+    //get the value for the visit selected
+    var instrument_dropdown = document.getElementById('instrument'),
+        visit_label_dropdown = document.getElementById('visit_label'),
+        visit_label_value = visit_label_dropdown.value,
+        request = getQueryVariable("visit_label"),
+        instrument_dropdown_value,
+        temp_array = ["All Instruments"],
+        instruments;
+    if ($.trim(visit_label_value) === 'All Visits') {visit_label_value = ''; }
+    if (request !== undefined) {
+        request = request.replace(/\+/g, ' ');
+    }
+    instrument_dropdown_value = getQueryVariable("instrument");
+    if (instrument_dropdown_value !== undefined) {
+        instrument_dropdown_value = instrument_dropdown_value.replace(/\+/g, ' ');
+    }
+    $.get("GetInstruments.php?visit_label=" + visit_label_value,
+        function (data) {
+            instruments = data.split("\n");
+            instruments = temp_array.concat(instruments); //adds 'All instruments to the array'
+            instrument_dropdown.options.length = 0;
+            var i, numInstruments = instruments.length, val;
+            for (i = 0; i < numInstruments; i += 1) {
+                val = instruments[i];
+                if (val !== '') {
+                    instrument_dropdown.options[i] = new Option(val, val);
+                    if ((instrument_dropdown_value === val) && (instrument_dropdown_value !== '')) {
+                        instrument_dropdown.options[i].selected = "selected";
+                    }
+                }
+            }
+            //jQuery('#visits').change();
+        });
+}
+
+
+//runs the function when the page is loaded..
+$(function () {
+    "use strict";
+    changeVisitLabels();
+    $('#instrument,#visit_label,#users').bind('change', function () { $("#filter").trigger('click'); }); //The form is automatically loaded when the instrument dropdown is changed
+    $('#update_data').bind('change', function () { $("#filter").trigger('click'); }); //The form is automatically loaded when the dropdown is changed
+});
+