Merge pull request #36 from ablaom/05-juptyer-update-re-mljlinearmodels

Update 05 Juptyer notebooks to address MLJLinearModels 0.6 update

Author: ablaom

.gitignore

@@ -8,3 +8,124 @@ sandbox/
 /docs/site/
 /docs/Manifest.toml
 .vscode
+
+slides/src/AnthonyFeedback.txt
+slides/src/IQVIA_logo.png
+slides/src/MLJLogo2.svg
+slides/src/MLJ_as_lego.pdf
+slides/src/ML_packages_in_julia.png
+slides/src/NESI-logo.jpg
+slides/src/PCA.png
+slides/src/PCA2.png
+slides/src/S1.png
+slides/src/S10.png
+slides/src/S11.png
+slides/src/S12.png
+slides/src/S13.png
+slides/src/S14.png
+slides/src/S2.png
+slides/src/S3.png
+slides/src/S4.png
+slides/src/S5.png
+slides/src/S6.png
+slides/src/S7.png
+slides/src/S8.png
+slides/src/S9.png
+slides/src/Sboston.png
+slides/src/Sforest.png
+slides/src/Sforest2.png
+slides/src/Sforest3.png
+slides/src/Stree.png
+slides/src/Stree2.png
+slides/src/Turing_logo.png
+slides/src/Tutorials
+slides/src/UoA_logo.png
+slides/src/X.png
+slides/src/_region_.aux
+slides/src/_region_.log
+slides/src/_region_.nav
+slides/src/_region_.out
+slides/src/_region_.pdf
+slides/src/_region_.snm
+slides/src/_region_.tex
+slides/src/_region_.toc
+slides/src/abstract.md
+slides/src/all_three.png
+slides/src/auto/
+slides/src/beamercolorthemeTuring.sty
+slides/src/beamerinnerthemeTuring.sty
+slides/src/beamerouterthemeTuring.sty
+slides/src/beamerthemeTuringDark.sty
+slides/src/beamerthemeTuringLight.sty
+slides/src/classifier.png
+slides/src/classifier.xml
+slides/src/code.tex
+slides/src/composite.png
+slides/src/composite.xml
+slides/src/demo.ipynb
+slides/src/demo.md
+slides/src/demo/
+slides/src/dim_reducer.png
+slides/src/dim_reducer.xml
+slides/src/features.md
+slides/src/images/
+slides/src/julia.png
+slides/src/just_right.png
+slides/src/kaggle1.png
+slides/src/kaggle2.png
+slides/src/kaggle3.png
+slides/src/lego.pdf
+slides/src/model_search.ipynb
+slides/src/model_search.jl
+slides/src/model_search.md
+slides/src/model_search.tex
+slides/src/model_search1.png
+slides/src/model_search2.png
+slides/src/model_search3.md
+slides/src/model_search3.png
+slides/src/most.stars.png
+slides/src/most_stars.pdf
+slides/src/most_stars.png
+slides/src/other_toolboxes.png
+slides/src/other_toolboxes/
+slides/src/overfitting1.png
+slides/src/overfitting2.png
+slides/src/overfitting3.png
+slides/src/overfitting4.png
+slides/src/overfitting5.png
+slides/src/overfitting6.png
+slides/src/p66tpwz7h6ed8r339blj.pdf
+slides/src/packages.jpg
+slides/src/performance.png
+slides/src/pipeline.png
+slides/src/pipelines.xml
+slides/src/poly.jl
+slides/src/r.png
+slides/src/raise_hand_forbidden.png
+slides/src/scitypes.png
+slides/src/separate.png
+slides/src/separate.xml
+slides/src/sk_open_issue.png
+slides/src/slides.aux
+slides/src/slides.log
+slides/src/slides.nav
+slides/src/slides.out
+slides/src/slides.pdf
+slides/src/slides.snm
+slides/src/slides.toc
+slides/src/tables.md
+slides/src/tablesmap.md
+slides/src/tableswordcloud.png
+slides/src/test.aux
+slides/src/test.log
+slides/src/test.pdf
+slides/src/test.tex
+slides/src/tour-2.md
+slides/src/tuning/
+slides/src/two_model_stack.png
+slides/src/two_model_stack_minus1.png
+slides/src/two_model_stack_minus2.png
+slides/src/using_tasks.jl
+slides/src/warwick.jpg
+slides/src/warwick.png
+slides/src/y.png

notebooks/02_models/env/mandelbrot.png

@@ -11,9 +11,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 
 [[ArrayInterface]]
 deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
-git-tree-sha1 = "1ee88c4c76caa995a885dc2f22a5d548dfbbc0ba"
+git-tree-sha1 = "ffc6588e17bcfcaa79dfa5b4f417025e755f83fc"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "3.2.2"
+version = "4.0.1"
 
 [[Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -40,9 +40,9 @@ version = "0.1.4"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "926870acb6cbcf029396f2f2de030282b6bc1941"
+git-tree-sha1 = "6e39c91fb4b84dcb870813c91674bdebb9145895"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.11.4"
+version = "1.11.5"
 
 [[ChangesOfVariables]]
 deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
@@ -83,6 +83,12 @@ git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7"
 uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3"
 version = "0.3.2"
 
+[[Contour]]
+deps = ["StaticArrays"]
+git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7"
+uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
+version = "0.5.7"
+
 [[Crayons]]
 git-tree-sha1 = "b618084b49e78985ffa8422f32b9838e397b9fc2"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@@ -148,9 +154,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "6a8dc9f82e5ce28279b6e3e2cea9421154f5bd0d"
+git-tree-sha1 = "08f8555cb66936b871dcfdad09a4f89e754181db"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.37"
+version = "0.25.40"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
@@ -182,9 +188,9 @@ version = "0.12.7"
 
 [[FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
-git-tree-sha1 = "8b3c09b56acaf3c0e581c66638b85c8650ee9dca"
+git-tree-sha1 = "6eae72e9943d8992d14359c32aed5f892bda1569"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
-version = "2.8.1"
+version = "2.10.0"
 
 [[FixedPointNumbers]]
 deps = ["Statistics"]
@@ -200,9 +206,9 @@ version = "0.4.2"
 
 [[ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "2b72a5624e289ee18256111657663721d59c143e"
+git-tree-sha1 = "1bd6fc0c344fc0cbee1f42f8d2e7ec8253dda2d2"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.24"
+version = "0.10.25"
 
 [[Future]]
 deps = ["Random"]
@@ -264,9 +270,9 @@ version = "1.0.0"
 
 [[JLLWrappers]]
 deps = ["Preferences"]
-git-tree-sha1 = "642a199af8b68253517b80bd3bfd17eb4e84df6e"
+git-tree-sha1 = "22df5b96feef82434b07327e2d3c770a9b21e023"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.3.0"
+version = "1.4.0"
 
 [[JLSO]]
 deps = ["BSON", "CodecZlib", "FilePathsBase", "Memento", "Pkg", "Serialization"]
@@ -349,9 +355,9 @@ version = "0.17.0"
 
 [[MLJBase]]
 deps = ["CategoricalArrays", "CategoricalDistributions", "ComputationalResources", "Dates", "DelimitedFiles", "Distributed", "Distributions", "InteractiveUtils", "InvertedIndices", "LinearAlgebra", "LossFunctions", "MLJModelInterface", "Missings", "OrderedCollections", "Parameters", "PrettyTables", "ProgressMeter", "Random", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "54cae1f0bde7bbc72fe7ff42353b7880347bd0d5"
+git-tree-sha1 = "ebb3a834a25658ff547de621456c677abbea5d02"
 uuid = "a7f614a8-145f-11e9-1d2a-a57a1082229d"
-version = "0.19.2"
+version = "0.19.4"
 
 [[MLJDecisionTreeInterface]]
 deps = ["DecisionTree", "MLJModelInterface", "Random"]
@@ -373,9 +379,9 @@ version = "0.4.1"
 
 [[MLJLinearModels]]
 deps = ["DocStringExtensions", "IterativeSolvers", "LinearAlgebra", "LinearMaps", "MLJModelInterface", "Optim", "Parameters"]
-git-tree-sha1 = "dfbf4a5a8454034d21b6cfd9fd5a7960c8f7fb88"
+git-tree-sha1 = "6537fd96eb429c6e11a03c5910880c6da1837488"
 uuid = "6ee0df7b-362f-4a72-a706-9e79364fb692"
-version = "0.5.7"
+version = "0.6.0"
 
 [[MLJModelInterface]]
 deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
@@ -385,9 +391,9 @@ version = "1.3.5"
 
 [[MLJModels]]
 deps = ["CategoricalArrays", "CategoricalDistributions", "Dates", "Distances", "Distributions", "InteractiveUtils", "LinearAlgebra", "MLJModelInterface", "OrderedCollections", "Parameters", "Pkg", "PrettyPrinting", "REPL", "Random", "Requires", "ScientificTypes", "StatisticalTraits", "Statistics", "StatsBase", "Tables"]
-git-tree-sha1 = "cecd98731368f1eb46634d1476f49332560f886f"
+git-tree-sha1 = "90ab49d5f63b331863183dd1937e496608c72e25"
 uuid = "d491faf4-2d78-11e9-2867-c94bc002c0b7"
-version = "0.15.1"
+version = "0.15.2"
 
 [[MLJSerialization]]
 deps = ["IterationControl", "JLSO", "MLJBase", "MLJModelInterface"]
@@ -494,9 +500,9 @@ version = "0.12.3"
 
 [[Parsers]]
 deps = ["Dates"]
-git-tree-sha1 = "d7fa6237da8004be601e19bd6666083056649918"
+git-tree-sha1 = "92f91ba9e5941fc781fecf5494ac1da87bdac775"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.1.3"
+version = "2.2.0"
 
 [[Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -515,9 +521,9 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250"
 version = "1.2.3"
 
 [[PrettyPrinting]]
-git-tree-sha1 = "a5db8a42938bc65c2679406c51a8f5fe9597c6e7"
+git-tree-sha1 = "4be53d093e9e37772cc89e1009e8f6ad10c4681b"
 uuid = "54e16d92-306c-5ea0-a30b-337be88ac337"
-version = "0.3.2"
+version = "0.4.0"
 
 [[PrettyTables]]
 deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
@@ -561,9 +567,9 @@ version = "1.2.2"
 
 [[Requires]]
 deps = ["UUIDs"]
-git-tree-sha1 = "8f82019e525f4d5c669692772a6f4b0a58b06a6a"
+git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
 uuid = "ae029012-a4dd-5104-9daa-d747884805df"
-version = "1.2.0"
+version = "1.3.0"
 
 [[Rmath]]
 deps = ["Random", "Rmath_jll"]
@@ -631,15 +637,15 @@ version = "1.0.0"
 
 [[Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "7f5a513baec6f122401abfc8e9c074fdac54f6c1"
+git-tree-sha1 = "b4912cd034cdf968e06ca5f943bb54b17b97793a"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.4.1"
+version = "0.5.1"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "88a559da57529581472320892576a486fa2377b9"
+git-tree-sha1 = "2ae4fe21e97cd13efd857462c1869b73c9f61be3"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.3.1"
+version = "1.3.2"
 
 [[StatisticalTraits]]
 deps = ["ScientificTypesBase"]
@@ -720,10 +726,10 @@ version = "1.0.2"
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
 [[UnicodePlots]]
-deps = ["Crayons", "Dates", "SparseArrays", "StatsBase"]
-git-tree-sha1 = "3cb994143aba28cfe66615702505b2d294cebd3e"
+deps = ["Contour", "Crayons", "Dates", "SparseArrays", "StatsBase"]
+git-tree-sha1 = "0efb50275f42f2795b771a4ad2c339db9760fd98"
 uuid = "b8865327-cd53-5732-bb35-84acbb429228"
-version = "2.5.1"
+version = "2.6.0"
 
 [[Zlib_jll]]
 deps = ["Libdl"]

notebooks/05_composition/env/Manifest.toml

@@ -4,4 +4,4 @@ MLJDecisionTreeInterface = "c6f25543-311c-4c74-83dc-3ea6d1015661"
 MLJLinearModels = "6ee0df7b-362f-4a72-a706-9e79364fb692"
 
 [compat]
-julia = "1.6"
+julia = "1.6"