pin notebook version <7 #371

.github/workflows/code-tests-docker.yaml

@@ -1,6 +1,13 @@
 name: Code tests (docker)
 
-on: [pull_request]
+on:
+  pull_request:
+      paths-ignore:
+      - "README.md"
+      - "CHANGELOG.md"
+      - "CONTRIBUTORS.md"
+      - "CONTRIBUTING.md"
+      - "docs/**"
 
 jobs:
   code-tests-docker:

CHANGELOG.md

@@ -1,9 +1,11 @@
 ### 1.7.7 - UNRELEASED
 
 ### Bugfixes
-
 * Fix bug where the `deprotonate` argument is not wired up to `graphein.protein.graphs.construct_graphs`. [#375](https://github.com/a-r-j/graphein/pull/375)
-* Remove `typing_extension` as dependency since we now only support Python >=3.8 and `Literal` is included in `typing` there.
+
+#### Misc
+* Resolve issue with notebook version and `pluggy` in Dockerfile. [#372](https://github.com/a-r-j/graphein/pull/372)
+* Remove `typing_extension` as dependency since we now primarily support Python >=3.8 and `Literal` is included in `typing` there.
 
 ### 1.7.6
 

Dockerfile

@@ -28,8 +28,10 @@ RUN echo "$(cat requirements/base.in)" >> requirements.txt \
     && echo "$(cat requirements/dev.in)" >> requirements.txt \
     && echo "$(cat requirements/extras.in)" >> requirements.txt
 
+RUN pip install notebook==6.*
 RUN pip install -r requirements.txt --no-cache-dir
 
+RUN conda install conda-forge::pluggy
 RUN conda install -c conda-forge libgcc-ng
 RUN conda install scipy scikit-learn matplotlib pandas cython ipykernel
 RUN pip install ticc==0.1.4 --no-cache-dir