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Code for the pre-trained reference models uploaded to scvi-hub on HuggingFace

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scvi-hub-references

Code for the pre-trained reference models uploaded to scvi-hub on HuggingFace.

First, install pre-commit from pip and run pre-commit install at the root of the repository.

To run the code, create a conda environment, install snakemake in this environment, then run the following command:

export HF_API_TOKEN=TOKEN_VAL
snakemake --use-conda --cores all --envvars HF_API_TOKEN

from the corresponding reference directory's workflow directory.