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Commits on Feb 8, 2021

• Update README and rename model to EpitomeModel (#66)

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  akmorrow13

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  193c906

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• fixed bug in download ChIP-Atlas code (#65)

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  akmorrow13

  and

  Alyssa Morrow

  authored
  ee966fb

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• Rebased all region conversions into a class (#64)

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  akmorrow13

  authored
  79080f0

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Commits on Feb 2, 2021

• fixes #59 (#62)

  akmorrow13

  authored
  d1e6b97

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• Bump matplotlib version (#61)

  RK900

  authored
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• Fix dataset class docs (#60)

  RK900

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Commits on Jan 29, 2021

• fixed avging bug in score_matrix (#57)

  akmorrow13

  authored
  6c85e34

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Commits on Jan 28, 2021

• fixed dataset access for hg19 (#56)

  akmorrow13

  authored
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• Remove stds (#55)

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  akmorrow13

  and

  Alyssa Morrow

  authored
  4dc4856

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Commits on Jan 27, 2021

• Move data h5 (#46)

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  akmorrow13

  authored
  a0f7cc6

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• Move tf.function outside of predict functions and fix Pyranges issue (#48)

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  RK900

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Commits on Jan 25, 2021

• fixed DNase truncation issue (#49)

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  akmorrow13

  and

  Alyssa Morrow

  authored
  369db70

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Commits on Jan 14, 2021

• fixed bug in score_matrix (#42)

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  akmorrow13

  and

  Alyssa Morrow

  authored
  ccd1cf8

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Commits on Jan 8, 2021

• Docs update to functions, viz and data.rst (#41)

  RK900

  authored
  3738727

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Commits on Jan 4, 2021

• Remove dnase requirement (#40)

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  akmorrow13

  authored
  9d87e9b

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Commits on Oct 21, 2020

• Minor fixes to data download (#39)

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  akmorrow13

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Commits on Oct 14, 2020

• added ATAC-seq to data download, bed2Pyranges fix (#37)

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  akmorrow13

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  046ca12

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Commits on Sep 11, 2020

• added function to score preds on matrix (#36)

  akmorrow13

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Commits on Sep 3, 2020

• remove comments (#35)

  akmorrow13

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• Speed up generator code (#34)

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  akmorrow13

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  75d9675

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Commits on Sep 2, 2020

• Data + test for score_peak_file (#33)

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  RK900

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  2dfde40

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Commits on Aug 31, 2020

• Downloads test data from S3 for unit tests (#32)

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  akmorrow13

  authored
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Commits on Aug 27, 2020

• make ENV variable available to specify data location (#31)

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  akmorrow13

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Commits on Aug 25, 2020

• Remove calls to .numpy() (#28)

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  RK900

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  ec5919d

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• Fix matplotlib ImportError (#29)

  RK900

  authored
  3bd2de3

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• Updated download code for ENCODE3 (#27)

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  akmorrow13

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Commits on Aug 24, 2020

• fixes for 22 and 23 (#26)

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  akmorrow13

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• added test for similarity vector length (#25)

  akmorrow13

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• fixes #21 (#24)

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  akmorrow13

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Commits on Jul 15, 2020

• Merge pull request #20 from akmorrow13/master

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  akmorrow13

  authored
  8ed7b2b

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• bug fix for _predict function

  

  Alyssa Morrow

  authored and

  Alyssa Morrow

  committed
  467b76e

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Commits on Jun 24, 2020

• Merge pull request #19 from akmorrow13/master

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  akmorrow13

  authored
  68c0f50

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Commits on Jun 23, 2020

• modified sampling for multiclass

  

  Alyssa Morrow

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  Alyssa Morrow

  committed
  19615a3

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Commits on Apr 30, 2020

• Merge branch 'master' of https://github.com/YosefLab/epitome

  

  Alyssa Morrow

  authored and

  Alyssa Morrow

  committed
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• generative

  

  Alyssa Morrow

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  Alyssa Morrow

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