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tile-op --reorganize drops TSV header; later tile-op --annotate-cell segfaults

Status: Open.

#12 In Yichen-Si/punkst;

· koetjen opened on Feb 13, 2026

Questions about using HVG vs all genes for FICTURE/punkst factor selection and multisample approach

Status: Open.

#10 In Yichen-Si/punkst;

· ccruizm opened on Feb 4, 2026

factor_report.py crashes in multisample runs with ValueError: All arrays must be of the same length

Status: Open.

#8 In Yichen-Si/punkst;

· sabir-yas opened on Jan 5, 2026

Clarification needed: how cells.tsv is used in the punkst xenium pipeline

Status: Open.

#7 In Yichen-Si/punkst;

· sabir-yas opened on Jan 2, 2026