You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, when I run pairLiftOver I keep on getting the error: TypeError: expected str, bytes or os.PathLike object, not NoneType
The code I am running is as follows: pairLiftOver --input <path to .hic file> --input-format juicer --output-format hic --high-res --out-chromsizes < path to chrom sizes file> --in-assembly hg38 --out-assembly hg19 --chain-file <path to chain file>
Do you have any idea why I might be getting this error? Thank you!
The text was updated successfully, but these errors were encountered:
Hi, you also need to specify the prefix of the output file names through the parameter --out-pre. By the way, since you selected to output the contact matrices in the ".hic" format, I suggest increasing the allocated memory to a higher value, perhaps 40G or 50G, through the --memory parameter.
Hi, when I run pairLiftOver I keep on getting the error: TypeError: expected str, bytes or os.PathLike object, not NoneType
The code I am running is as follows:
pairLiftOver --input <path to .hic file> --input-format juicer --output-format hic --high-res --out-chromsizes < path to chrom sizes file> --in-assembly hg38 --out-assembly hg19 --chain-file <path to chain file>
Do you have any idea why I might be getting this error? Thank you!
The text was updated successfully, but these errors were encountered: