iceberg-bioimage/CITATION.cff at main · WayScience/iceberg-bioimage · GitHub

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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
---
cff-version: 1.2.0
title: iceberg-bioimage
message: >-
  If you use this software, please cite it using the
  metadata from the CITATION.cff file.
type: software
doi: "10.5281/zenodo.19672521"
authors:
  - given-names: Dave
    family-names: Bunten
    orcid: "https://orcid.org/0000-0001-6041-3665"
  - given-names: Jenna
    family-names: Tomkinson
    orcid: "https://orcid.org/0000-0003-2676-5813"
  - given-names: Michael
    family-names: Lippincott
    orcid: "https://orcid.org/0000-0002-8637-1448"
  - given-names: Cameron
    family-names: Mattson
    orcid: "https://orcid.org/0009-0008-4969-779X"
  - given-names: Gregory
    family-names: Way
    orcid: "https://orcid.org/0000-0002-0503-9348"
url: "https://github.com/d33bs/iceberg-bioimage"
repository-code: "https://github.com/d33bs/iceberg-bioimage"
repository-artifact: "https://pypi.org/project/iceberg-bioimage/"
abstract: >-
  A format-agnostic framework for cataloging and querying bioimaging data
  (Zarr, OME-TIFF) with Apache Iceberg as the metadata layer.
keywords:
  - python
  - bioimaging
  - iceberg
  - zarr
  - ome-tiff
  - duckdb
license: BSD-3-Clause
references:
  - type: software
    title: CytoTable
    authors:
      - given-names: David
        family-names: Bunten
        orcid: "https://orcid.org/0000-0001-6041-3665"
      - given-names: Jenna
        family-names: Tomkinson
        orcid: "https://orcid.org/0000-0003-2676-5813"
      - given-names: Erik
        family-names: Serrano
        orcid: "https://orcid.org/0000-0003-4188-9080"
      - given-names: Michael
        family-names: Lippincott
        orcid: "https://orcid.org/0000-0002-8637-1448"
      - given-names: Kenneth
        family-names: Brewer
        orcid: "https://orcid.org/0000-0003-4030-0254"
      - given-names: Vincent
        family-names: Rubinetti
        orcid: "https://orcid.org/0000-0002-4655-3773"
      - given-names: Faisal
        family-names: Alquaddoomi
        orcid: "https://orcid.org/0000-0003-4297-8747"
      - given-names: Gregory
        family-names: Way
        orcid: "https://orcid.org/0000-0002-0503-9348"
    repository-code: "https://github.com/cytomining/CytoTable"
    url: "https://cytomining.github.io/CytoTable/"
    notes: >-
      CytoTable was reviewed as a related project while defining the boundary
      between metadata publication in iceberg-bioimage and broader tabular
      warehouse-construction workflows.
  - type: software
    title: ome-arrow
    authors:
      - given-names: Dave
        family-names: Bunten
        orcid: "https://orcid.org/0000-0001-6041-3665"
      - given-names: Jenna
        family-names: Tomkinson
        orcid: "https://orcid.org/0000-0003-2676-5813"
      - given-names: Michael
        family-names: Lippincott
        orcid: "https://orcid.org/0000-0002-8637-1448"
      - given-names: Cameron
        family-names: Mattson
        orcid: "https://orcid.org/0009-0008-4969-779X"
      - given-names: Gregory
        family-names: Way
        orcid: "https://orcid.org/0000-0002-0503-9348"
    repository-code: "https://github.com/wayscience/ome-arrow"
    notes: >-
      OME-Arrow was reviewed as the Arrow-native image-value companion project.
      Both projects target the Zarr ecosystem: the current ome-arrow stack
      requires zarr>=3, while iceberg-bioimage supports zarr<4 with scanning
      and metadata handling for Zarr v2 and v3 layouts; iceberg-bioimage does
      not vendor or depend on ome-arrow.