diff --git a/agrvate b/agrvate index 398f1ab..1eb53a8 100644 --- a/agrvate +++ b/agrvate @@ -5,7 +5,7 @@ -version="1.0" +version="1.0.1" USAGE=$(echo -e "\n\ AgrVATE: Agr Variant Assessment & Typing Engine \n\n\ VERSION: agrvate v$version \n\n\ @@ -135,7 +135,7 @@ if [[ -f $fasta_path ]] #Check if input is a file then if [[ $(grep -v ">" $fasta_path | grep -q -i "[^ATCGNWSMKRY]"; echo $?) -eq 1 ]] #check if seqence has characters other than ATGCN then - fna_name=$(echo "$bname" | cut -f1 -d".") + fna_name="${bname%.*}" input_check="pass" else 1>&2 echo -e "Seqence has non-standard nucleic acid characters\n$USAGE"