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Commits on Nov 13, 2018

• change surface output.

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• add new program to find out surface residues

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Commits on Jul 23, 2018

• change color palette.

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• add axes to pwm_logo plot.

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Commits on Apr 16, 2018

• fix a stupid bug in PWMcos .ffp file format...

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  4cc1576

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• fix bugs in PWMcos output and calculations.

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  4e4e647

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• make minor changes to PWMcos tool output...

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Commits on Apr 13, 2018

• change PWMcos ffp file format.

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• add PWMcos tool for cafemol ninfo generating.

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Commits on Apr 5, 2018

• Merge branch 'dev'

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• add PSF Head lines...

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Commits on Dec 6, 2017

• Merge remote-tracking branch 'origin/dev' into dev

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• add all contact pair output to cg_top.

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Commits on Sep 1, 2017

• add reversed PWM logo to utils/pwm_LOGO.py

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Commits on Jun 28, 2017

• add new tool to translate cafemol-format pdb to normal pdb.

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• new util to automatically extract ninfo for pro.

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  94b2bdf

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Commits on May 25, 2017

• rearrange ffp read in for PDSS

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• rearragne output order.

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• jiaru xinde cong pwm zhijie dedao ffp de chengxu.

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  2c6941f

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• chagne default value for PDSS_scale_factor to 1.

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• add scalign factor for PDSS energy calculation in DCD.

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Commits on May 18, 2017

• merge from new branch which provide warning messages for pdss.

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Commits on May 17, 2017

• minor changes for doxygen.

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  6a04e84

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• new statistics of pseudo ontacts in pdss in ffp.

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  1e6617e

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• rename shift test file.

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  585aeb1

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• fix one bug of NC-BC angle in pdss statistics with mutations.

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  b418ae6

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• fix a bug of calculating NC-BC angle in pdss statistics.

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Commits on Apr 20, 2017

• minor change to util/pwm_transpose.py

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• add new tool to calculate PWM score for a given sequence

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Commits on Apr 7, 2017

• minor change of help info for pdb_rmsd calculation.

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Commits on Mar 6, 2017

• pwm_LOGO can deal with pfm and ppm now.

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Commits on Feb 22, 2017

• minor change to PDSS energy calculation formula

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Commits on Feb 21, 2017

• add new features to introduce energy shift to PDSS.

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  cb7726d

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• fix PDSS energy calculation bugs.

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  217c69f

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• add energy unit for kbT.

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