bert_model.py

import math
import os
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple

import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss

from transformers.activations import ACT2FN
from transformers.file_utils import (
    ModelOutput,
    add_code_sample_docstrings,
    add_start_docstrings,
    add_start_docstrings_to_model_forward,
    replace_return_docstrings,
)
from transformers.modeling_outputs import (
    BaseModelOutputWithPastAndCrossAttentions,
    BaseModelOutputWithPoolingAndCrossAttentions,
    CausalLMOutputWithCrossAttentions,
    MaskedLMOutput,
    MultipleChoiceModelOutput,
    NextSentencePredictorOutput,
    QuestionAnsweringModelOutput,
    SequenceClassifierOutput,
    TokenClassifierOutput,
)
from transformers.modeling_utils import (
    PreTrainedModel,
    apply_chunking_to_forward,
    find_pruneable_heads_and_indices,
    prune_linear_layer,
)
from transformers.utils import logging
from transformers import BertConfig
from flop_computation import get_flops_computer


logger = logging.get_logger(__name__)

_CONFIG_FOR_DOC = "BertConfig"
_TOKENIZER_FOR_DOC = "BertTokenizer"

BERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
    "bert-base-uncased",
    "bert-large-uncased",
    "bert-base-cased",
    "bert-large-cased",
    "bert-base-multilingual-uncased",
    "bert-base-multilingual-cased",
    "bert-base-chinese",
    "bert-base-german-cased",
    "bert-large-uncased-whole-word-masking",
    "bert-large-cased-whole-word-masking",
    "bert-large-uncased-whole-word-masking-finetuned-squad",
    "bert-large-cased-whole-word-masking-finetuned-squad",
    "bert-base-cased-finetuned-mrpc",
    "bert-base-german-dbmdz-cased",
    "bert-base-german-dbmdz-uncased",
    "cl-tohoku/bert-base-japanese",
    "cl-tohoku/bert-base-japanese-whole-word-masking",
    "cl-tohoku/bert-base-japanese-char",
    "cl-tohoku/bert-base-japanese-char-whole-word-masking",
    "TurkuNLP/bert-base-finnish-cased-v1",
    "TurkuNLP/bert-base-finnish-uncased-v1",
    "wietsedv/bert-base-dutch-cased",
    # See all BERT models at https://huggingface.co/models?filter=bert
]


def load_tf_weights_in_bert(model, config, tf_checkpoint_path):
    """Load tf checkpoints in a pytorch model."""
    try:
        import re

        import numpy as np
        import tensorflow as tf
    except ImportError:
        logger.error(
            "Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
            "https://www.tensorflow.org/install/ for installation instructions."
        )
        raise
    tf_path = os.path.abspath(tf_checkpoint_path)
    logger.info("Converting TensorFlow checkpoint from {}".format(tf_path))
    # Load weights from TF model
    init_vars = tf.train.list_variables(tf_path)
    names = []
    arrays = []
    for name, shape in init_vars:
        logger.info("Loading TF weight {} with shape {}".format(name, shape))
        array = tf.train.load_variable(tf_path, name)
        names.append(name)
        arrays.append(array)

    for name, array in zip(names, arrays):
        name = name.split("/")
        # adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
        # which are not required for using pretrained model
        if any(
            n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
            for n in name
        ):
            logger.info("Skipping {}".format("/".join(name)))
            continue
        pointer = model
        for m_name in name:
            if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
                scope_names = re.split(r"_(\d+)", m_name)
            else:
                scope_names = [m_name]
            if scope_names[0] == "kernel" or scope_names[0] == "gamma":
                pointer = getattr(pointer, "weight")
            elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
                pointer = getattr(pointer, "bias")
            elif scope_names[0] == "output_weights":
                pointer = getattr(pointer, "weight")
            elif scope_names[0] == "squad":
                pointer = getattr(pointer, "classifier")
            else:
                try:
                    pointer = getattr(pointer, scope_names[0])
                except AttributeError:
                    logger.info("Skipping {}".format("/".join(name)))
                    continue
            if len(scope_names) >= 2:
                num = int(scope_names[1])
                pointer = pointer[num]
        if m_name[-11:] == "_embeddings":
            pointer = getattr(pointer, "weight")
        elif m_name == "kernel":
            array = np.transpose(array)
        try:
            assert (
                pointer.shape == array.shape
            ), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
        except AssertionError as e:
            e.args += (pointer.shape, array.shape)
            raise
        logger.info("Initialize PyTorch weight {}".format(name))
        pointer.data = torch.from_numpy(array)
    return model


class BertEmbeddings(nn.Module):
    """Construct the embeddings from word, position and token_type embeddings."""

    def __init__(self, config):
        super().__init__()
        self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
        self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
        self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)

        # self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
        # any TensorFlow checkpoint file
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

        # position_ids (1, len position emb) is contiguous in memory and exported when serialized
        self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
        self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")

    def forward(
        self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
    ):
        if input_ids is not None:
            input_shape = input_ids.size()
        else:
            input_shape = inputs_embeds.size()[:-1]

        seq_length = input_shape[1]

        if position_ids is None:
            position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]

        if token_type_ids is None:
            token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)

        if inputs_embeds is None:
            inputs_embeds = self.word_embeddings(input_ids)
        token_type_embeddings = self.token_type_embeddings(token_type_ids)

        embeddings = inputs_embeds + token_type_embeddings
        if self.position_embedding_type == "absolute":
            position_embeddings = self.position_embeddings(position_ids)
            embeddings += position_embeddings
        embeddings = self.LayerNorm(embeddings)
        embeddings = self.dropout(embeddings)
        return embeddings


class BertSelfAttention(nn.Module):
    def __init__(self, config):
        super().__init__()
        if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
            raise ValueError(
                "The hidden size (%d) is not a multiple of the number of attention "
                "heads (%d)" % (config.hidden_size, config.num_attention_heads)
            )

        self.num_attention_heads = config.num_attention_heads
        self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
        self.all_head_size = self.num_attention_heads * self.attention_head_size

        self.query = nn.Linear(config.hidden_size, self.all_head_size)
        self.key = nn.Linear(config.hidden_size, self.all_head_size)
        self.value = nn.Linear(config.hidden_size, self.all_head_size)

        self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
        self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
        if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
            self.max_position_embeddings = config.max_position_embeddings
            self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)

        self.is_decoder = config.is_decoder

    def transpose_for_scores(self, x):
        new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
        x = x.view(*new_x_shape)
        return x.permute(0, 2, 1, 3)

    def forward(
        self,
        hidden_states,
        attention_mask=None,
        head_mask=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        past_key_value=None,
        output_attentions=False,
    ):
        mixed_query_layer = self.query(hidden_states)

        # If this is instantiated as a cross-attention module, the keys
        # and values come from an encoder; the attention mask needs to be
        # such that the encoder's padding tokens are not attended to.
        is_cross_attention = encoder_hidden_states is not None

        if is_cross_attention and past_key_value is not None:
            # reuse k,v, cross_attentions
            key_layer = past_key_value[0]
            value_layer = past_key_value[1]
            attention_mask = encoder_attention_mask
        elif is_cross_attention:
            key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
            value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
            attention_mask = encoder_attention_mask
        elif past_key_value is not None:
            key_layer = self.transpose_for_scores(self.key(hidden_states))
            value_layer = self.transpose_for_scores(self.value(hidden_states))
            key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
            value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
        else:
            key_layer = self.transpose_for_scores(self.key(hidden_states))
            value_layer = self.transpose_for_scores(self.value(hidden_states))

        query_layer = self.transpose_for_scores(mixed_query_layer)

        if self.is_decoder:
            # if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
            # Further calls to cross_attention layer can then reuse all cross-attention
            # key/value_states (first "if" case)
            # if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
            # all previous decoder key/value_states. Further calls to uni-directional self-attention
            # can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
            # if encoder bi-directional self-attention `past_key_value` is always `None`
            past_key_value = (key_layer, value_layer)

        # Take the dot product between "query" and "key" to get the raw attention scores.
        attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))

        if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
            seq_length = hidden_states.size()[1]
            position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
            position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
            distance = position_ids_l - position_ids_r
            positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
            positional_embedding = positional_embedding.to(dtype=query_layer.dtype)  # fp16 compatibility

            if self.position_embedding_type == "relative_key":
                relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
                attention_scores = attention_scores + relative_position_scores
            elif self.position_embedding_type == "relative_key_query":
                relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
                relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
                attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key

        attention_scores = attention_scores / math.sqrt(self.attention_head_size)
        if attention_mask is not None:
            # Apply the attention mask is (precomputed for all layers in BertModel forward() function)
            attention_scores = attention_scores + attention_mask

        # Normalize the attention scores to probabilities.
        attention_probs = nn.Softmax(dim=-1)(attention_scores)

        # This is actually dropping out entire tokens to attend to, which might
        # seem a bit unusual, but is taken from the original Transformer paper.
        attention_probs = self.dropout(attention_probs)

        # Mask heads if we want to
        if head_mask is not None:
            attention_probs = attention_probs * head_mask

        context_layer = torch.matmul(attention_probs, value_layer)

        context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
        new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
        context_layer = context_layer.view(*new_context_layer_shape)

        outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)

        if self.is_decoder:
            outputs = outputs + (past_key_value,)
        return outputs


class BertSelfOutput(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertAttention(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.self = BertSelfAttention(config)
        self.output = BertSelfOutput(config)
        self.pruned_heads = set()

    def prune_heads(self, heads):
        if len(heads) == 0:
            return
        heads, index = find_pruneable_heads_and_indices(
            heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
        )

        # Prune linear layers
        self.self.query = prune_linear_layer(self.self.query, index)
        self.self.key = prune_linear_layer(self.self.key, index)
        self.self.value = prune_linear_layer(self.self.value, index)
        self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)

        # Update hyper params and store pruned heads
        self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
        self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
        self.pruned_heads = self.pruned_heads.union(heads)

    def forward(
        self,
        hidden_states,
        attention_mask=None,
        head_mask=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        past_key_value=None,
        output_attentions=False,
    ):
        self_outputs = self.self(
            hidden_states,
            attention_mask,
            head_mask,
            encoder_hidden_states,
            encoder_attention_mask,
            past_key_value,
            output_attentions,
        )
        attention_output = self.output(self_outputs[0], hidden_states)
        outputs = (attention_output,) + self_outputs[1:]  # add attentions if we output them
        return outputs


class BertIntermediate(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
        if isinstance(config.hidden_act, str):
            self.intermediate_act_fn = ACT2FN[config.hidden_act]
        else:
            self.intermediate_act_fn = config.hidden_act

    def forward(self, hidden_states):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.intermediate_act_fn(hidden_states)
        return hidden_states


class BertOutput(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states, input_tensor):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class BertLayer(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.chunk_size_feed_forward = config.chunk_size_feed_forward
        self.seq_len_dim = 1
        self.attention = BertAttention(config)
        self.is_decoder = config.is_decoder
        self.add_cross_attention = config.add_cross_attention
        if self.add_cross_attention:
            assert self.is_decoder, f"{self} should be used as a decoder model if cross attention is added"
            self.crossattention = BertAttention(config)
        self.intermediate = BertIntermediate(config)
        self.output = BertOutput(config)

    def forward(
        self,
        hidden_states,
        attention_mask=None,
        head_mask=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        past_key_value=None,
        output_attentions=False,
    ):
        # decoder uni-directional self-attention cached key/values tuple is at positions 1,2
        self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
        self_attention_outputs = self.attention(
            hidden_states,
            attention_mask,
            head_mask,
            output_attentions=output_attentions,
            past_key_value=self_attn_past_key_value,
        )
        attention_output = self_attention_outputs[0]

        # if decoder, the last output is tuple of self-attn cache
        if self.is_decoder:
            outputs = self_attention_outputs[1:-1]
            present_key_value = self_attention_outputs[-1]
        else:
            outputs = self_attention_outputs[1:]  # add self attentions if we output attention weights

        cross_attn_present_key_value = None
        if self.is_decoder and encoder_hidden_states is not None:
            assert hasattr(
                self, "crossattention"
            ), f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`"

            # cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
            cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
            cross_attention_outputs = self.crossattention(
                attention_output,
                attention_mask,
                head_mask,
                encoder_hidden_states,
                encoder_attention_mask,
                cross_attn_past_key_value,
                output_attentions,
            )
            attention_output = cross_attention_outputs[0]
            outputs = outputs + cross_attention_outputs[1:-1]  # add cross attentions if we output attention weights

            # add cross-attn cache to positions 3,4 of present_key_value tuple
            cross_attn_present_key_value = cross_attention_outputs[-1]
            present_key_value = present_key_value + cross_attn_present_key_value

        layer_output = apply_chunking_to_forward(
            self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
        )
        outputs = (layer_output,) + outputs

        # if decoder, return the attn key/values as the last output
        if self.is_decoder:
            outputs = outputs + (present_key_value,)

        return outputs

    def feed_forward_chunk(self, attention_output):
        intermediate_output = self.intermediate(attention_output)
        layer_output = self.output(intermediate_output, attention_output)
        return layer_output


class BertEncoder(nn.Module):
    def __init__(self, config, args=None):
        super().__init__()
        self.config = config
        self.args = args
        self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])

        self.layer_drop = getattr(args, 'layer_drop') if args is not None else False
        self.layer_drop_rate = getattr(args, 'layer_drop_rate') if args is not None else 0.0
        self.layer_drop_lin_decay = getattr(args, 'layer_drop_lin_decay') if args is not None else False

        self.flops = get_flops_computer(self.config)

    def forward(
        self,
        hidden_states,
        attention_mask=None,
        head_mask=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        past_key_values=None,
        use_cache=None,
        output_attentions=False,
        output_hidden_states=False,
        return_dict=True,
    ):
        all_hidden_states = () if output_hidden_states else None
        all_self_attentions = () if output_attentions else None
        all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
        flops = 0

        last_layer_states = None
        next_decoder_cache = () if use_cache else None
        for i, layer_module in enumerate(self.layer):
            if output_hidden_states:
                all_hidden_states = all_hidden_states + (hidden_states,)

            layer_head_mask = head_mask[i] if head_mask is not None else None
            past_key_value = past_key_values[i] if past_key_values is not None else None
            if getattr(self.config, "gradient_checkpointing", False):

                def create_custom_forward(module):
                    def custom_forward(*inputs):
                        return module(*inputs, past_key_value, output_attentions)

                    return custom_forward

                layer_outputs = torch.utils.checkpoint.checkpoint(
                    create_custom_forward(layer_module),
                    hidden_states,
                    attention_mask,
                    layer_head_mask,
                    encoder_hidden_states,
                    encoder_attention_mask,
                )
            else:
                layer_outputs = layer_module(
                    hidden_states,
                    attention_mask,
                    layer_head_mask,
                    encoder_hidden_states,
                    encoder_attention_mask,
                    past_key_value,
                    output_attentions,
                )

            hidden_states = layer_outputs[0]
            flops += self.flops.get_block_flops(seq_len=hidden_states.shape[1]) * hidden_states.shape[0]

            if self.layer_drop and i != 0: # no dropping for the first layer
                drop_rate = self.layer_drop_rate
                if self.layer_drop_lin_decay:
                    drop_rate *= i / len(self.layer)

                if self.training:
                    mask = torch.bernoulli(torch.full((hidden_states.shape[0],), drop_rate, device=hidden_states.device)) # [bs]
                    num_drops = (mask == 1).sum().item()
                    mask = mask[:, None, None].expand(*hidden_states.shape) # [bs, seq_len, hidden_dim]
                    hidden_states = hidden_states * (1. - mask) + last_layer_states * mask

                    # reduce flops
                    flops -= self.flops.get_block_flops(seq_len=hidden_states.shape[1]) * num_drops
                else:
                    hidden_states = hidden_states * (1. - drop_rate) + last_layer_states * drop_rate

            if use_cache:
                next_decoder_cache += (layer_outputs[-1],)
            if output_attentions:
                all_self_attentions = all_self_attentions + (layer_outputs[1],)
                if self.config.add_cross_attention:
                    all_cross_attentions = all_cross_attentions + (layer_outputs[2],)

            # record last layer output
            last_layer_states = hidden_states

        if output_hidden_states:
            all_hidden_states = all_hidden_states + (hidden_states,)

        if not return_dict:
            return tuple(
                v
                for v in [
                    hidden_states,
                    next_decoder_cache,
                    all_hidden_states,
                    all_self_attentions,
                    all_cross_attentions
                ]
                if v is not None
            )
        return BaseModelOutputWithPastAndCrossAttentions(
            last_hidden_state=hidden_states,
            past_key_values=next_decoder_cache,
            hidden_states=all_hidden_states,
            attentions=all_self_attentions,
            cross_attentions=all_cross_attentions
        )


class BertPooler(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.activation = nn.Tanh()

    def forward(self, hidden_states):
        # We "pool" the model by simply taking the hidden state corresponding
        # to the first token.
        first_token_tensor = hidden_states[:, 0]
        pooled_output = self.dense(first_token_tensor)
        pooled_output = self.activation(pooled_output)
        return pooled_output


class BertPredictionHeadTransform(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        if isinstance(config.hidden_act, str):
            self.transform_act_fn = ACT2FN[config.hidden_act]
        else:
            self.transform_act_fn = config.hidden_act
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)

    def forward(self, hidden_states):
        hidden_states = self.dense(hidden_states)
        hidden_states = self.transform_act_fn(hidden_states)
        hidden_states = self.LayerNorm(hidden_states)
        return hidden_states


class BertLMPredictionHead(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.transform = BertPredictionHeadTransform(config)

        # The output weights are the same as the input embeddings, but there is
        # an output-only bias for each token.
        self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)

        self.bias = nn.Parameter(torch.zeros(config.vocab_size))

        # Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
        self.decoder.bias = self.bias

    def forward(self, hidden_states):
        hidden_states = self.transform(hidden_states)
        hidden_states = self.decoder(hidden_states)
        return hidden_states


class BertOnlyMLMHead(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.predictions = BertLMPredictionHead(config)

    def forward(self, sequence_output):
        prediction_scores = self.predictions(sequence_output)
        return prediction_scores


class BertPreTrainedModel(PreTrainedModel):
    """
    An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
    models.
    """

    config_class = BertConfig
    load_tf_weights = load_tf_weights_in_bert
    base_model_prefix = "bert"
    _keys_to_ignore_on_load_missing = [r"position_ids"]

    def _init_weights(self, module):
        """ Initialize the weights """
        if isinstance(module, (nn.Linear, nn.Embedding)):
            # Slightly different from the TF version which uses truncated_normal for initialization
            # cf https://github.com/pytorch/pytorch/pull/5617
            module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
        elif isinstance(module, nn.LayerNorm):
            module.bias.data.zero_()
            module.weight.data.fill_(1.0)
        if isinstance(module, nn.Linear) and module.bias is not None:
            module.bias.data.zero_()


class BertModel(BertPreTrainedModel):
    """

    The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
    cross-attention is added between the self-attention layers, following the architecture described in `Attention is
    all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
    Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.

    To behave as an decoder the model needs to be initialized with the :obj:`is_decoder` argument of the configuration
    set to :obj:`True`. To be used in a Seq2Seq model, the model needs to initialized with both :obj:`is_decoder`
    argument and :obj:`add_cross_attention` set to :obj:`True`; an :obj:`encoder_hidden_states` is then expected as an
    input to the forward pass.
    """

    def __init__(self, config, args=None, add_pooling_layer=True):
        super().__init__(config)
        self.config = config

        self.embeddings = BertEmbeddings(config)
        self.encoder = BertEncoder(config, args)

        self.pooler = BertPooler(config) if add_pooling_layer else None

        self.init_weights()

    def get_input_embeddings(self):
        return self.embeddings.word_embeddings

    def set_input_embeddings(self, value):
        self.embeddings.word_embeddings = value

    def _prune_heads(self, heads_to_prune):
        """
        Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
        class PreTrainedModel
        """
        for layer, heads in heads_to_prune.items():
            self.encoder.layer[layer].attention.prune_heads(heads)

    def forward(
        self,
        input_ids=None,
        attention_mask=None,
        token_type_ids=None,
        position_ids=None,
        head_mask=None,
        inputs_embeds=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        past_key_values=None,
        use_cache=None,
        output_attentions=None,
        output_hidden_states=None,
        return_dict=None,
    ):
        r"""
        encoder_hidden_states  (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
            Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
            the model is configured as a decoder.
        encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
            Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
            the cross-attention if the model is configured as a decoder. Mask values selected in ``[0, 1]``:

            - 1 for tokens that are **not masked**,
            - 0 for tokens that are **masked**.
        past_key_values (:obj:`tuple(tuple(torch.FloatTensor))` of length :obj:`config.n_layers` with each tuple having 4 tensors of shape :obj:`(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
            Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.

            If :obj:`past_key_values` are used, the user can optionally input only the last :obj:`decoder_input_ids`
            (those that don't have their past key value states given to this model) of shape :obj:`(batch_size, 1)`
            instead of all :obj:`decoder_input_ids` of shape :obj:`(batch_size, sequence_length)`.
        use_cache (:obj:`bool`, `optional`):
            If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
            decoding (see :obj:`past_key_values`).
        """
        output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
        output_hidden_states = (
            output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
        )
        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        if self.config.is_decoder:
            use_cache = use_cache if use_cache is not None else self.config.use_cache
        else:
            use_cache = False

        if input_ids is not None and inputs_embeds is not None:
            raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
        elif input_ids is not None:
            input_shape = input_ids.size()
            batch_size, seq_length = input_shape
        elif inputs_embeds is not None:
            input_shape = inputs_embeds.size()[:-1]
            batch_size, seq_length = input_shape
        else:
            raise ValueError("You have to specify either input_ids or inputs_embeds")

        device = input_ids.device if input_ids is not None else inputs_embeds.device

        # past_key_values_length
        past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0

        if attention_mask is None:
            attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
        if token_type_ids is None:
            token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)

        # We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
        # ourselves in which case we just need to make it broadcastable to all heads.
        extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)

        # If a 2D or 3D attention mask is provided for the cross-attention
        # we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
        if self.config.is_decoder and encoder_hidden_states is not None:
            encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
            encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
            if encoder_attention_mask is None:
                encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
            encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
        else:
            encoder_extended_attention_mask = None

        # Prepare head mask if needed
        # 1.0 in head_mask indicate we keep the head
        # attention_probs has shape bsz x n_heads x N x N
        # input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
        # and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
        head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)

        embedding_output = self.embeddings(
            input_ids=input_ids,
            position_ids=position_ids,
            token_type_ids=token_type_ids,
            inputs_embeds=inputs_embeds,
            past_key_values_length=past_key_values_length,
        )
        encoder_outputs = self.encoder(
            embedding_output,
            attention_mask=extended_attention_mask,
            head_mask=head_mask,
            encoder_hidden_states=encoder_hidden_states,
            encoder_attention_mask=encoder_extended_attention_mask,
            past_key_values=past_key_values,
            use_cache=use_cache,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )
        sequence_output = encoder_outputs[0]
        pooled_output = self.pooler(sequence_output) if self.pooler is not None else None

        if not return_dict:
            return (sequence_output, pooled_output) + encoder_outputs[1:]

        return BaseModelOutputWithPoolingAndCrossAttentions(
            last_hidden_state=sequence_output,
            pooler_output=pooled_output,
            past_key_values=encoder_outputs.past_key_values,
            hidden_states=encoder_outputs.hidden_states,
            attentions=encoder_outputs.attentions,
            cross_attentions=encoder_outputs.cross_attentions,
        )

class BertForMaskedLM(BertPreTrainedModel):

    _keys_to_ignore_on_load_unexpected = [r"pooler"]
    _keys_to_ignore_on_load_missing = [r"position_ids", r"predictions.decoder.bias"]

    def __init__(self, config, args=None):
        super().__init__(config)
        if config.is_decoder:
            logger.warning(
                "If you want to use `BertForMaskedLM` make sure `config.is_decoder=False` for "
                "bi-directional self-attention."
            )

        self.bert = BertModel(config, args=args, add_pooling_layer=False)
        self.cls = BertOnlyMLMHead(config)

        self.init_weights()

    def get_output_embeddings(self):
        return self.cls.predictions.decoder

    def set_output_embeddings(self, new_embeddings):
        self.cls.predictions.decoder = new_embeddings

    def forward(
        self,
        input_ids=None,
        attention_mask=None,
        token_type_ids=None,
        position_ids=None,
        head_mask=None,
        inputs_embeds=None,
        encoder_hidden_states=None,
        encoder_attention_mask=None,
        labels=None,
        output_attentions=None,
        output_hidden_states=None,
        return_dict=None,
    ):
        r"""
        labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
            Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
            config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
            (masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``
        """

        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        outputs = self.bert(
            input_ids,
            attention_mask=attention_mask,
            token_type_ids=token_type_ids,
            position_ids=position_ids,
            head_mask=head_mask,
            inputs_embeds=inputs_embeds,
            encoder_hidden_states=encoder_hidden_states,
            encoder_attention_mask=encoder_attention_mask,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )

        sequence_output = outputs[0]
        prediction_scores = self.cls(sequence_output)

        masked_lm_loss = None
        if labels is not None:
            loss_fct = CrossEntropyLoss()  # -100 index = padding token
            masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))

        if not return_dict:
            output = (prediction_scores,) + outputs[2:]
            return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output

        return MaskedLMOutput(
            loss=masked_lm_loss,
            logits=prediction_scores,
            hidden_states=outputs.hidden_states,
            attentions=outputs.attentions,
        )


    def prepare_inputs_for_generation(self, input_ids, attention_mask=None, **model_kwargs):
        input_shape = input_ids.shape
        effective_batch_size = input_shape[0]

        #  add a dummy token
        assert self.config.pad_token_id is not None, "The PAD token should be defined for generation"
        attention_mask = torch.cat([attention_mask, attention_mask.new_zeros((attention_mask.shape[0], 1))], dim=-1)
        dummy_token = torch.full(
            (effective_batch_size, 1), self.config.pad_token_id, dtype=torch.long, device=input_ids.device
        )
        input_ids = torch.cat([input_ids, dummy_token], dim=1)

        return {"input_ids": input_ids, "attention_mask": attention_mask}