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@UM-Applied-Algorithms-Lab

UM Applied Algorithms Lab

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  1. AWRY AWRY Public

    Lightning-fast FM-Index library, for the Rust ecosystem.

    Rust 6 3

  2. FindViralStrains FindViralStrains Public

    A pipeline to sift out viral strains from data sets using MFD

    Python 1

  3. CCCN_CFN_Tools CCCN_CFN_Tools Public

    A package for mass spec data processing

    R 1 1

  4. cuttlefish cuttlefish Public

    Forked from COMBINE-lab/cuttlefish

    Building the compacted de Bruijn graph efficiently from references or reads, with support for kmer counting along graph edges.

    C++

  5. FmAssemblyGraph FmAssemblyGraph Public

    Generates an assembly graph from an input fastq file using an fm-index to generate De Bruijn graph with edges containing weights and kmer labels.

    Rust

  6. FVS-Apptainer FVS-Apptainer Public

    Find Viral Stains inside of an apptainer container

    1

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