Implemented DPMON, cleaned up old files, updated documentation. #9
Workflow file for this run
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| name: BioNeuralNet | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| check-latest: true | |
| - name: List scripts directory contents | |
| run: ls -la scripts/ | |
| - name: Install dependencies with fast-install.py | |
| shell: bash | |
| run: | | |
| if [ "${{ matrix.os }}" = "windows-latest" ]; then | |
| python scripts/fast-install.py | |
| else | |
| chmod +x scripts/setup-env.sh | |
| chmod +x scripts/setup-R.sh | |
| python scripts/fast-install.py | |
| fi | |
| - name: Verify R installation | |
| shell: bash | |
| run: | | |
| R --version | |
| Rscript -e "library(WGCNA); cat('WGCNA loaded successfully')" | |
| - name: Run tests with pytest | |
| run: | | |
| pytest --cov=bioneuralnet --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella |