vocab.py

from __future__ import unicode_literals
import array
from collections import defaultdict
from functools import partial
import io
import logging
import os
import zipfile

import six
from six.moves.urllib.request import urlretrieve
import torch
from tqdm import tqdm
import tarfile

from .utils import reporthook

logger = logging.getLogger(__name__)

class Vocab(object):
    """Defines a vocabulary object that will be used to numericalize a field.

    Attributes:
        freqs: A collections.Counter object holding the frequencies of tokens
            in the data used to build the Vocab.
        stoi: A collections.defaultdict instance mapping token strings to
            numerical identifiers.
        itos: A list of token strings indexed by their numerical identifiers.
    """
    def __init__(self,  counter, max_size=10000000, min_freq=1, specials=['<|endoftext|>'], json_file =None,
                 vectors=None, unk_init=None, vectors_cache=None):
        """Create a Vocab object from a collections.Counter.

        Arguments:
            counter: collections.Counter object holding the frequencies of
                each value found in the data.
            max_size: The maximum size of the vocabulary, or None for no
                maximum. Default: None.
            min_freq: The minimum frequency needed to include a token in the
                vocabulary. Values less than 1 will be set to 1. Default: 1.
            specials: The list of special tokens (e.g., padding or eos) that
                will be prepended to the vocabulary in addition to an <unk>
                token. Default: ['<pad>']
            vectors: One of either the available pretrained vectors
                or custom pretrained vectors (see Vocab.load_vectors);
                or a list of aforementioned vectors
            unk_init (callback): by default, initialize out-of-vocabulary word vectors
                to zero vectors; can be any function that takes in a Tensor and
                returns a Tensor of the same size. Default: torch.Tensor.zero_
            vectors_cache: directory for cached vectors. Default: '.vector_cache'
        """

        if json_file is not None:
            with open(json_file,"r") as f:
                import json
                json_dic = json.load(f)

            self.itos={}
            self.stoi={}
            for key in json_dic.keys():
                self.itos[json_dic[key]]=key
                self.stoi[key] = json_dic[key]
        else:

            self.freqs = counter
            counter = counter.copy()
            min_freq = max(min_freq, 1)

            self.itos = list(specials)
            # frequencies of special tokens are not counted when building vocabulary
            # in frequency order
            for tok in specials:
                del counter[tok]

            max_size = None if max_size is None else max_size + len(self.itos)

            # sort by frequency, then alphabetically
            words_and_frequencies = sorted(counter.items(), key=lambda tup: tup[0])
            words_and_frequencies.sort(key=lambda tup: tup[1], reverse=True)

            for word, freq in words_and_frequencies:
                if freq < min_freq or len(self.itos) == max_size:
                    break
                self.itos.append(word)
            self.stoi = defaultdict(_default_unk_index)
            # stoi is simply a reverse dict for itos
            self.stoi.update({tok: i for i, tok in enumerate(self.itos)})

            self.vectors = None
            if vectors is not None:
                self.load_vectors(vectors, unk_init=unk_init, cache=vectors_cache)
            else:
                assert unk_init is None and vectors_cache is None

    def __eq__(self, other):
        if self.freqs != other.freqs:
            return False
        if self.stoi != other.stoi:
            return False
        if self.itos != other.itos:
            return False
        if self.vectors != other.vectors:
            return False
        return True

    def __len__(self):
        return len(self.itos)

    def extend(self, v, sort=False):
        words = sorted(v.itos) if sort else v.itos
        for w in words:
            if w not in self.stoi:
                self.itos.append(w)
                self.stoi[w] = len(self.itos) - 1

    def load_vectors(self, vectors, **kwargs):
        """
        Arguments:
            vectors: one of or a list containing instantiations of the
                GloVe, CharNGram, or Vectors classes. Alternatively, one
                of or a list of available pretrained vectors:
                charngram.100d
                fasttext.en.300d
                fasttext.simple.300d
                glove.42B.300d
                glove.840B.300d
                glove.twitter.27B.25d
                glove.twitter.27B.50d
                glove.twitter.27B.100d
                glove.twitter.27B.200d
                glove.6B.50d
                glove.6B.100d
                glove.6B.200d
                glove.6B.300d
            Remaining keyword arguments: Passed to the constructor of Vectors classes.
        """
        if not isinstance(vectors, list):
            vectors = [vectors]
        for idx, vector in enumerate(vectors):
            if six.PY2 and isinstance(vector, str):
                vector = six.text_type(vector)
            if isinstance(vector, six.string_types):
                # Convert the string pretrained vector identifier
                # to a Vectors object
                if vector not in pretrained_aliases:
                    raise ValueError(
                        "Got string input vector {}, but allowed pretrained "
                        "vectors are {}".format(
                            vector, list(pretrained_aliases.keys())))
                vectors[idx] = pretrained_aliases[vector](**kwargs)
            elif not isinstance(vector, Vectors):
                raise ValueError(
                    "Got input vectors of type {}, expected str or "
                    "Vectors object".format(type(vector)))

        tot_dim = sum(v.dim for v in vectors)
        self.vectors = torch.Tensor(len(self), tot_dim)
        for i, token in enumerate(self.itos):
            start_dim = 0
            for v in vectors:
                end_dim = start_dim + v.dim
                self.vectors[i][start_dim:end_dim] = v[token.strip()]
                start_dim = end_dim
            assert(start_dim == tot_dim)

    def set_vectors(self, stoi, vectors, dim, unk_init=torch.Tensor.zero_):
        """
        Set the vectors for the Vocab instance from a collection of Tensors.

        Arguments:
            stoi: A dictionary of string to the index of the associated vector
                in the `vectors` input argument.
            vectors: An indexed iterable (or other structure supporting __getitem__) that
                given an input index, returns a FloatTensor representing the vector
                for the token associated with the index. For example,
                vector[stoi["string"]] should return the vector for "string".
            dim: The dimensionality of the vectors.
            unk_init (callback): by default, initialize out-of-vocabulary word vectors
                to zero vectors; can be any function that takes in a Tensor and
                returns a Tensor of the same size. Default: torch.Tensor.zero_
        """
        self.vectors = torch.Tensor(len(self), dim)
        for i, token in enumerate(self.itos):
            wv_index = stoi.get(token, None)
            if wv_index is not None:
                self.vectors[i] = vectors[wv_index]
            else:
                self.vectors[i] = unk_init(self.vectors[i])


class Vocab_previous(object):
    """Defines a vocabulary object that will be used to numericalize a field.

    Attributes:
        freqs: A collections.Counter object holding the frequencies of tokens
            in the data used to build the Vocab.
        stoi: A collections.defaultdict instance mapping token strings to
            numerical identifiers.
        itos: A list of token strings indexed by their numerical identifiers.
    """
    def __init__(self, counter, max_size=10000000, min_freq=1, specials=['<|endoftext|>'],
                 vectors=None, unk_init=None, vectors_cache=None):
        """Create a Vocab object from a collections.Counter.

        Arguments:
            counter: collections.Counter object holding the frequencies of
                each value found in the data.
            max_size: The maximum size of the vocabulary, or None for no
                maximum. Default: None.
            min_freq: The minimum frequency needed to include a token in the
                vocabulary. Values less than 1 will be set to 1. Default: 1.
            specials: The list of special tokens (e.g., padding or eos) that
                will be prepended to the vocabulary in addition to an <unk>
                token. Default: ['<pad>']
            vectors: One of either the available pretrained vectors
                or custom pretrained vectors (see Vocab.load_vectors);
                or a list of aforementioned vectors
            unk_init (callback): by default, initialize out-of-vocabulary word vectors
                to zero vectors; can be any function that takes in a Tensor and
                returns a Tensor of the same size. Default: torch.Tensor.zero_
            vectors_cache: directory for cached vectors. Default: '.vector_cache'
        """
        self.freqs = counter
        counter = counter.copy()
        min_freq = max(min_freq, 1)

        self.itos = list(specials)
        # frequencies of special tokens are not counted when building vocabulary
        # in frequency order
        for tok in specials:
            del counter[tok]

        max_size = None if max_size is None else max_size + len(self.itos)

        # sort by frequency, then alphabetically
        words_and_frequencies = sorted(counter.items(), key=lambda tup: tup[0])
        words_and_frequencies.sort(key=lambda tup: tup[1], reverse=True)

        for word, freq in words_and_frequencies:
            if freq < min_freq or len(self.itos) == max_size:
                break
            self.itos.append(word)
        self.stoi = defaultdict(_default_unk_index)
        # stoi is simply a reverse dict for itos
        self.stoi.update({tok: i for i, tok in enumerate(self.itos)})

        self.vectors = None
        if vectors is not None:
            self.load_vectors(vectors, unk_init=unk_init, cache=vectors_cache)
        else:
            assert unk_init is None and vectors_cache is None

    def __eq__(self, other):
        if self.freqs != other.freqs:
            return False
        if self.stoi != other.stoi:
            return False
        if self.itos != other.itos:
            return False
        if self.vectors != other.vectors:
            return False
        return True

    def __len__(self):
        return len(self.itos)

    def extend(self, v, sort=False):
        words = sorted(v.itos) if sort else v.itos
        for w in words:
            if w not in self.stoi:
                self.itos.append(w)
                self.stoi[w] = len(self.itos) - 1

    def load_vectors(self, vectors, **kwargs):
        """
        Arguments:
            vectors: one of or a list containing instantiations of the
                GloVe, CharNGram, or Vectors classes. Alternatively, one
                of or a list of available pretrained vectors:
                charngram.100d
                fasttext.en.300d
                fasttext.simple.300d
                glove.42B.300d
                glove.840B.300d
                glove.twitter.27B.25d
                glove.twitter.27B.50d
                glove.twitter.27B.100d
                glove.twitter.27B.200d
                glove.6B.50d
                glove.6B.100d
                glove.6B.200d
                glove.6B.300d
            Remaining keyword arguments: Passed to the constructor of Vectors classes.
        """
        if not isinstance(vectors, list):
            vectors = [vectors]
        for idx, vector in enumerate(vectors):
            if six.PY2 and isinstance(vector, str):
                vector = six.text_type(vector)
            if isinstance(vector, six.string_types):
                # Convert the string pretrained vector identifier
                # to a Vectors object
                if vector not in pretrained_aliases:
                    raise ValueError(
                        "Got string input vector {}, but allowed pretrained "
                        "vectors are {}".format(
                            vector, list(pretrained_aliases.keys())))
                vectors[idx] = pretrained_aliases[vector](**kwargs)
            elif not isinstance(vector, Vectors):
                raise ValueError(
                    "Got input vectors of type {}, expected str or "
                    "Vectors object".format(type(vector)))

        tot_dim = sum(v.dim for v in vectors)
        self.vectors = torch.Tensor(len(self), tot_dim)
        for i, token in enumerate(self.itos):
            start_dim = 0
            for v in vectors:
                end_dim = start_dim + v.dim
                self.vectors[i][start_dim:end_dim] = v[token.strip()]
                start_dim = end_dim
            assert(start_dim == tot_dim)

    def set_vectors(self, stoi, vectors, dim, unk_init=torch.Tensor.zero_):
        """
        Set the vectors for the Vocab instance from a collection of Tensors.

        Arguments:
            stoi: A dictionary of string to the index of the associated vector
                in the `vectors` input argument.
            vectors: An indexed iterable (or other structure supporting __getitem__) that
                given an input index, returns a FloatTensor representing the vector
                for the token associated with the index. For example,
                vector[stoi["string"]] should return the vector for "string".
            dim: The dimensionality of the vectors.
            unk_init (callback): by default, initialize out-of-vocabulary word vectors
                to zero vectors; can be any function that takes in a Tensor and
                returns a Tensor of the same size. Default: torch.Tensor.zero_
        """
        self.vectors = torch.Tensor(len(self), dim)
        for i, token in enumerate(self.itos):
            wv_index = stoi.get(token, None)
            if wv_index is not None:
                self.vectors[i] = vectors[wv_index]
            else:
                self.vectors[i] = unk_init(self.vectors[i])


class Vectors(object):

    def __init__(self, name, cache=None,
                 url=None, unk_init=None):
        """
        Arguments:
           name: name of the file that contains the vectors
           cache: directory for cached vectors
           url: url for download if vectors not found in cache
           unk_init (callback): by default, initalize out-of-vocabulary word vectors
               to zero vectors; can be any function that takes in a Tensor and
               returns a Tensor of the same size
         """
        cache = '.vector_cache' if cache is None else cache
        self.unk_init = torch.Tensor.zero_ if unk_init is None else unk_init
        self.cache(name, cache, url=url)

    def __getitem__(self, token):
        if token in self.stoi:
            return self.vectors[self.stoi[token]]
        else:
            return self.unk_init(torch.Tensor(self.dim))  # self.unk_init(torch.Tensor(1, self.dim))

    def cache(self, name, cache, url=None):
        if os.path.isfile(name):
            path = name
            path_pt = os.path.join(cache, os.path.basename(name)) + '.pt'
        else:
            path = os.path.join(cache, name)
            path_pt = path + '.pt'

        if not os.path.isfile(path_pt):
            if not os.path.isfile(path) and url:
                logger.info('Downloading vectors from {}'.format(url))
                if not os.path.exists(cache):
                    os.makedirs(cache)
                dest = os.path.join(cache, os.path.basename(url))
                if not os.path.isfile(dest):
                    with tqdm(unit='B', unit_scale=True, miniters=1, desc=dest) as t:
                        try:
                            urlretrieve(url, dest, reporthook=reporthook(t))
                        except KeyboardInterrupt as e:  # remove the partial zip file
                            os.remove(dest)
                            raise e
                logger.info('Extracting vectors into {}'.format(cache))
                ext = os.path.splitext(dest)[1][1:]
                if ext == 'zip':
                    with zipfile.ZipFile(dest, "r") as zf:
                        zf.extractall(cache)
                elif ext == 'gz':
                    with tarfile.open(dest, 'r:gz') as tar:
                        tar.extractall(path=cache)
            if not os.path.isfile(path):
                raise RuntimeError('no vectors found at {}'.format(path))

            # str call is necessary for Python 2/3 compatibility, since
            # argument must be Python 2 str (Python 3 bytes) or
            # Python 3 str (Python 2 unicode)
            itos, vectors, dim = [], array.array(str('d')), None

            # Try to read the whole file with utf-8 encoding.
            binary_lines = False
            try:
                with io.open(path, encoding="utf8") as f:
                    lines = [line for line in f]
            # If there are malformed lines, read in binary mode
            # and manually decode each word from utf-8
            except:
                logger.warning("Could not read {} as UTF8 file, "
                               "reading file as bytes and skipping "
                               "words with malformed UTF8.".format(path))
                with open(path, 'rb') as f:
                    lines = [line for line in f]
                binary_lines = True

            logger.info("Loading vectors from {}".format(path))
            for line in tqdm(lines, total=len(lines)):
                # Explicitly splitting on " " is important, so we don't
                # get rid of Unicode non-breaking spaces in the vectors.
                entries = line.rstrip().split(b" " if binary_lines else " ")

                word, entries = entries[0], entries[1:]
                if dim is None and len(entries) > 1:
                    dim = len(entries)
                elif len(entries) == 1:
                    logger.warning("Skipping token {} with 1-dimensional "
                                   "vector {}; likely a header".format(word, entries))
                    continue
                elif dim != len(entries):
                    raise RuntimeError(
                        "Vector for token {} has {} dimensions, but previously "
                        "read vectors have {} dimensions. All vectors must have "
                        "the same number of dimensions.".format(word, len(entries), dim))

                if binary_lines:
                    try:
                        if isinstance(word, six.binary_type):
                            word = word.decode('utf-8')
                    except:
                        logger.info("Skipping non-UTF8 token {}".format(repr(word)))
                        continue
                vectors.extend(float(x) for x in entries)
                itos.append(word)

            self.itos = itos
            self.stoi = {word: i for i, word in enumerate(itos)}
            self.vectors = torch.Tensor(vectors).view(-1, dim)
            self.dim = dim
            logger.info('Saving vectors to {}'.format(path_pt))
            if not os.path.exists(cache):
                os.makedirs(cache)
            torch.save((self.itos, self.stoi, self.vectors, self.dim), path_pt)
        else:
            logger.info('Loading vectors from {}'.format(path_pt))
            self.itos, self.stoi, self.vectors, self.dim = torch.load(path_pt)


class GloVe(Vectors):
    url = {
        '42B': 'http://nlp.stanford.edu/data/glove.42B.300d.zip',
        '840B': 'http://nlp.stanford.edu/data/glove.840B.300d.zip',
        'twitter.27B': 'http://nlp.stanford.edu/data/glove.twitter.27B.zip',
        '6B': 'http://nlp.stanford.edu/data/glove.6B.zip',
    }

    def __init__(self, name='840B', dim=300, **kwargs):
        url = self.url[name]
        name = 'glove.{}.{}d.txt'.format(name, str(dim))
        super(GloVe, self).__init__(name, url=url, **kwargs)


class FastText(Vectors):

    url_base = 'https://s3-us-west-1.amazonaws.com/fasttext-vectors/wiki.{}.vec'

    def __init__(self, language="en", **kwargs):
        url = self.url_base.format(language)
        name = os.path.basename(url)
        super(FastText, self).__init__(name, url=url, **kwargs)


class CharNGram(Vectors):

    name = 'charNgram.txt'
    url = ('http://www.logos.t.u-tokyo.ac.jp/~hassy/publications/arxiv2016jmt/'
           'jmt_pre-trained_embeddings.tar.gz')

    def __init__(self, **kwargs):
        super(CharNGram, self).__init__(self.name, url=self.url, **kwargs)

    def __getitem__(self, token):
        vector = torch.Tensor(1, self.dim).zero_()
        if token == "<unk>":
            return self.unk_init(vector)
        # These literals need to be coerced to unicode for Python 2 compatibility
        # when we try to join them with read ngrams from the files.
        chars = ['#BEGIN#'] + list(token) + ['#END#']
        num_vectors = 0
        for n in [2, 3, 4]:
            end = len(chars) - n + 1
            grams = [chars[i:(i + n)] for i in range(end)]
            for gram in grams:
                gram_key = '{}gram-{}'.format(n, ''.join(gram))
                if gram_key in self.stoi:
                    vector += self.vectors[self.stoi[gram_key]]
                    num_vectors += 1
        if num_vectors > 0:
            vector /= num_vectors
        else:
            vector = self.unk_init(vector)
        return vector


def _default_unk_index():
    return 0


pretrained_aliases = {
    "charngram.100d": partial(CharNGram),
    "fasttext.en.300d": partial(FastText, language="en"),
    "fasttext.simple.300d": partial(FastText, language="simple"),
    "glove.42B.300d": partial(GloVe, name="42B", dim="300"),
    "glove.840B.300d": partial(GloVe, name="840B", dim="300"),
    "glove.twitter.27B.25d": partial(GloVe, name="twitter.27B", dim="25"),
    "glove.twitter.27B.50d": partial(GloVe, name="twitter.27B", dim="50"),
    "glove.twitter.27B.100d": partial(GloVe, name="twitter.27B", dim="100"),
    "glove.twitter.27B.200d": partial(GloVe, name="twitter.27B", dim="200"),
    "glove.6B.50d": partial(GloVe, name="6B", dim="50"),
    "glove.6B.100d": partial(GloVe, name="6B", dim="100"),
    "glove.6B.200d": partial(GloVe, name="6B", dim="200"),
    "glove.6B.300d": partial(GloVe, name="6B", dim="300")
}
"""Mapping from string name to factory function"""