Mouse Trophoblast smallRNAseq analyses

Performed at Tuteja Lab, Iowa State University, Ames IA-50011

Documentation

The Wiki for the entire analyses is provided in this R-markdown files 1_smallRNAseq.Rmd and 2_proteomics.Rmd. The rendered html file is accessible on this link. Links for the sections are provided below:

1. Small RNAseq analyses
2. Proteomics analyses
3. Bulk RNA-seq analyses

Data availability

• Small RNAseq data available for download upon publication from NCBI GEO GSE222855
• Proteomics data available for download upon pulication from Massive UCSD repository

Contacts

1. Project related questions: Geetu Tuteja
2. Scripts and workflow related questions: please open an issue here on GitHub.

Publication

If you use the scripts from this repository in your research, please cite this publication:

Jessica A Kinkade, Arun S Seetharam, Shrikesh Sachdev, Nathan J Bivens, Brett S Phinney, Gabriela Grigorean, R Michael Roberts, Geetu Tuteja, Cheryl S Rosenfeld, Extracellular vesicles from mouse trophoblast cells: Effects on neural progenitor cells and potential participants in the placenta–brain axis, Biology of Reproduction, Volume 110, Issue 2, February 2024, Pages 310–328, DOI: 10.1093/biolre/ioad146