Remove version pin of DelayDiffEq and update Manifest

Author: mhauru

Manifest.toml

@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.6"
+julia_version = "1.11.7"
 manifest_format = "2.0"
-project_hash = "9f86f29e94eb0d08fa3f55118bf3765e18345c9e"
+project_hash = "6ed163b5c6c108dfaae31b757b21ff71e297872f"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7"
@@ -690,9 +690,9 @@ version = "0.1.2"
 
 [[deps.DelayDiffEq]]
 deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack", "SymbolicIndexingInterface"]
-git-tree-sha1 = "c50981fb5b6441a1213debb1423385a462e88032"
+git-tree-sha1 = "bb84c7ab3de56ada66430b5671db3b3cdaadcd61"
 uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
-version = "5.56.0"
+version = "5.61.0"
 
 [[deps.DelimitedFiles]]
 deps = ["Mmap"]
@@ -708,9 +708,9 @@ version = "0.4.0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"]
-git-tree-sha1 = "6df3b15d504315ec306118aed14f9d7af9f83db1"
+git-tree-sha1 = "087632db966c90079a5534e4147afea9136ca39a"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.189.1"
+version = "6.190.2"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -933,9 +933,9 @@ version = "1.0.5"
 
 [[deps.Enzyme]]
 deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"]
-git-tree-sha1 = "66ec698bd4791c8d2b2be2fe2a472d1dd76a5c7d"
+git-tree-sha1 = "8bd38788cad934e433f944678885d8525cccc009"
 uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9"
-version = "0.13.75"
+version = "0.13.76"
 
     [deps.Enzyme.extensions]
     EnzymeBFloat16sExt = "BFloat16s"
@@ -964,9 +964,9 @@ weakdeps = ["Adapt"]
 
 [[deps.Enzyme_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "bf15bd2b3ddff92fc5bb5687ffe074ebd814c756"
+git-tree-sha1 = "440abfda8e1329662bed574250dde0dcd91f3181"
 uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef"
-version = "0.0.196+0"
+version = "0.0.197+0"
 
 [[deps.EpollShim_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1599,9 +1599,9 @@ version = "0.1.17"
 
 [[deps.LazyArrays]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"]
-git-tree-sha1 = "76627adb8c542c6b73f68d4bfd0aa71c9893a079"
+git-tree-sha1 = "21057b6f4f5db1475e653735fda7d1de1c267b46"
 uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02"
-version = "2.6.2"
+version = "2.6.3"
 
     [deps.LazyArrays.extensions]
     LazyArraysBandedMatricesExt = "BandedMatrices"
@@ -1743,10 +1743,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 version = "1.11.0"
 
 [[deps.LinearSolve]]
-deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "69cee52e516c859e64adba702ac382c0498a4e29"
+deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"]
+git-tree-sha1 = "1c597eceb5ead73dae17ffa4dcc1160e3e4da1f3"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "3.40.0"
+version = "3.28.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveAMDGPUExt = "AMDGPU"
@@ -1756,7 +1756,6 @@ version = "3.40.0"
     LinearSolveCUDAExt = "CUDA"
     LinearSolveCUDSSExt = "CUDSS"
     LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"]
-    LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"]
     LinearSolveEnzymeExt = "EnzymeCore"
     LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices"
     LinearSolveFastLapackInterfaceExt = "FastLapackInterface"
@@ -1778,7 +1777,6 @@ version = "3.40.0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e"
     CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c"
-    CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8"
     EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
     FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e"
     FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641"
@@ -2152,9 +2150,9 @@ version = "0.8.1"
 
 [[deps.Mooncake]]
 deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "DispatchDoctor", "ExprTools", "FunctionWrappers", "GPUArraysCore", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Test"]
-git-tree-sha1 = "2aa902cb9f45dbeaaae5eaa98559d600b1f5deb7"
+git-tree-sha1 = "bc28c3170e7c78d671ff512ca80487ce7e375bb5"
 uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
-version = "0.4.159"
+version = "0.4.160"
 
     [deps.Mooncake.extensions]
     MooncakeAllocCheckExt = "AllocCheck"
@@ -2289,10 +2287,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.NonlinearSolve]]
-deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"]
-git-tree-sha1 = "d2ec18c1e4eccbb70b64be2435fc3b06fbcdc0a1"
+deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"]
+git-tree-sha1 = "627967f6e36aac9f5afb2fb285e33b676a6892f9"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "4.10.0"
+version = "4.11.0"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt"
@@ -2301,7 +2299,7 @@ version = "4.10.0"
     NonlinearSolveMINPACKExt = "MINPACK"
     NonlinearSolveNLSolversExt = "NLSolvers"
     NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"]
-    NonlinearSolvePETScExt = ["PETSc", "MPI"]
+    NonlinearSolvePETScExt = ["PETSc", "MPI", "SparseArrays"]
     NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations"
     NonlinearSolveSpeedMappingExt = "SpeedMapping"
     NonlinearSolveSundialsExt = "Sundials"
@@ -2317,14 +2315,15 @@ version = "4.10.0"
     NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
     PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0"
     SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4"
+    SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
     SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412"
     Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
 
 [[deps.NonlinearSolveBase]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
-git-tree-sha1 = "99a400f7ad42e56431c76f3eadee0755f2123fda"
+git-tree-sha1 = "bc0c764f8d4cbd75dc8e4968e62194495c2c6637"
 uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0"
-version = "1.15.0"
+version = "1.16.0"
 weakdeps = ["BandedMatrices", "ChainRulesCore", "Enzyme", "ForwardDiff", "LineSearch", "LinearSolve", "Mooncake", "ReverseDiff", "SparseArrays", "SparseMatrixColorings", "Tracker"]
 
     [deps.NonlinearSolveBase.extensions]
@@ -3094,9 +3093,9 @@ version = "0.5.2"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "dfec1fce27c829814348266486b4cb8fdcb263fb"
+git-tree-sha1 = "16fa030fb4bd4df373a677eca0460c3eee791ab2"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.119.0"
+version = "2.120.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -3267,12 +3266,13 @@ version = "1.11.0"
 
 [[deps.SparseConnectivityTracer]]
 deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"]
-git-tree-sha1 = "e49c106eb7c78f55cdfa39e8bddeda24e1e09fce"
+git-tree-sha1 = "3c3a42a29f696f16273741ffe589b4003f539088"
 uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5"
-version = "1.0.2"
-weakdeps = ["LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"]
+version = "1.1.0"
+weakdeps = ["ChainRulesCore", "LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"]
 
     [deps.SparseConnectivityTracer.extensions]
+    SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore"
     SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions"
     SparseConnectivityTracerNNlibExt = "NNlib"
     SparseConnectivityTracerNaNMathExt = "NaNMath"
@@ -3496,9 +3496,9 @@ version = "5.2.3+0"
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "93104ca226670c0cb92ba8bc6998852ad55a2d4c"
+git-tree-sha1 = "b19cf024a2b11d72bef7c74ac3d1cbe86ec9e4ed"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.43"
+version = "0.3.44"
 weakdeps = ["PrettyTables"]
 
     [deps.SymbolicIndexingInterface.extensions]
@@ -3693,16 +3693,15 @@ version = "0.4.1"
 
 [[deps.Unitful]]
 deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "cec2df8cf14e0844a8c4d770d12347fda5931d72"
+git-tree-sha1 = "6258d453843c466d84c17a58732dda5deeb8d3af"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.25.0"
-weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "LaTeXStrings", "Latexify", "Printf"]
+version = "1.24.0"
+weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"]
 
     [deps.Unitful.extensions]
     ConstructionBaseUnitfulExt = "ConstructionBase"
     ForwardDiffExt = "ForwardDiff"
     InverseFunctionsUnitfulExt = "InverseFunctions"
-    LatexifyExt = ["Latexify", "LaTeXStrings"]
     PrintfExt = "Printf"
 
 [[deps.UnitfulLatexify]]