pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools>=65", "wheel", "setuptools_scm[toml]>=3.4"]

[tool.setuptools_scm]
write_to = "flyvision/version.py"

[tool.setuptools]
include-package-data = true


[project]
classifiers = [
  "Intended Audience :: Developers",
  "Intended Audience :: Education",
  "Intended Audience :: Science/Research",
  "Topic :: Adaptive Technologies",
  "Topic :: Scientific/Engineering",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
  "Topic :: Scientific/Engineering :: Mathematics",
  """License :: OSI Approved :: MIT License""",
  "Natural Language :: English",
  "Operating System :: OS Independent",
  "Programming Language :: Python :: 3",
  "Development Status :: 3 - Alpha",
]
dependencies = [
  "ipython",
  "numba==0.55.2",
  "datamate",
  "scipy",
  "matplotlib==3.7.1",
  "networkx",
  "scikit-learn==1.1.1",
  "umap-learn==0.5.3",
  "ffmpeg-python",
  "pytest",
  "torch",
  "torchvision",
  "python-dotenv",
  "hydra-core",
  "toolz",
  "tqdm",
  "requests",
  "google-api-python-client",
  "xarray==2023.7.0",
  "pandas==2.2.2",
  "joblib==1.3.2",
]
description = "Connectome and task-constrained vision models of the fruit fly."
dynamic = ["version"]
name = "flyvision"
readme = "README.md"
requires-python = ">=3.6"

[project.optional-dependencies]
dev = [
  "pre-commit",
  "ruff",
  "pytest",
  "jupyter",
  "papermill",
  "tabulate",
  "tqdm",
  "ipywidgets",
]
docs = [
  "mkdocs",
  "mkdocs-material",
  "markdown-include",
  "mkdocs-redirects",
  "mkdocstrings[python] >= 0.18",
  "nbconvert",
  "mike",
  "mkdocs-macros-plugin",
  "jupyter",
  "tabulate",
  "tqdm",
  "ipywidgets",
]
examples = ["jupyter", "tabulate", "tqdm", "ipywidgets"]
no-version-pins = [
  "numba",
  "matplotlib",
  "scikit-learn",
  "umap-learn",
  "xarray",
  "pandas",
  "joblib",
]

# Package installation configuration
[tool.setuptools.packages.find]
exclude = [] # exclude packages matching these glob patterns (empty by default)
include = [
  "flyvision*",
  "flyvis*",
] # package names should match these glob patterns (["*"] by default)
namespaces = false # to disable scanning PEP 420 namespaces (true by default)
where = ["."] # list of folders that contain the packages (["."] by default)

# ruff configs
[tool.ruff]
extend-include = []
line-length = 90

[tool.ruff.lint]
# pycodestyle, Pyflakes, pyupgrade, flake8-bugbear, flake8-simplify, isort
ignore = [
  "E731", # allow naming lambda functions.
  "B006", # allow mutable default arguments.
  "B008", # allow function calls in default args.
  "F841", # allow unused variables.
]
select = ["E", "F", "W", "B", "SIM", "I"]

[tool.ruff.lint.extend-per-file-ignores]
"__init__.py" = [
  "I001",
  "E402",
  "F401",
  "F403",
] # allow unused imports and undefined names
"test_*.py" = ["F403", "F405"]

# [tool.ruff.lint.isort]
# case-sensitive = true
# lines-between-types = 0  # like isort default.
# relative-imports-order = "furthest-to-closest"  # like isort default.
# known-first-party = ["flyvision", "tests", "examples", "scripts"]

[tool.ruff.format]
# exclude = ["*.ipynb"]
preview = true
quote-style = "preserve"

[tool.pylint."MESSAGES CONTROL"]
disable = """"""

# Pytest configuration
[tool.pytest.ini_options]
markers = [
  "slow: marks tests as slow (deselect with '-m \"not slow\"')",
  "gpu: marks tests that require a gpu (deselect with '-m \"not gpu\"')",
  "require_large_download: tests that require large data downloads (deselect with '-m \"not require_large_download\"')",
  "require_download: tests that require data downloads (deselect with '-m \"not require_download\"')",
]
testpaths = ["tests"]

# Pyright configuration
[tool.pyright]
exclude = [
  "**/__pycache__",
  "**/__node_modules__",
  ".git",
  "docs",
  ".fonts",
  ".ruff_cache",
  "config",
  "data",
  "images",
]
ignore = []
include = ["flyvision", "scripts", "tests", "examples"]
python_version = "3.x"
reportUnsupportedDunderAll = false