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Complete JUnit 4 migration with Spring 3.2 upgrade #109

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Complete JUnit 4 migration with Spring 3.2 upgrade

Complete JUnit 4 migration with Spring 3.2 upgrade #109

Re-run triggered December 22, 2025 01:30
@rvosarvosa
#315
copilot/fix-junit-spring-upgrade-errors
Status Failure
Total duration 1m 23s
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ci.yml

on: pull_request
Build and Test treebase-core
1m 18s
Build and Test treebase-core
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13 errors
org.cipres.treebase.core.CoreServiceLauncherTest ► testJDBCConnection: treebase-core/src/test/java/org/cipres/treebase/core/CoreServiceLauncherTest.java#L53
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.core.CoreServiceLauncherTest.xml Error: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'nexusService' defined in class path resource [applicationContext-db-standalone.xml]: Cannot resolve reference to bean 'matrixDataTypeHome' while setting bean property 'matrixDataTypeHome'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'matrixDataTypeHome' defined in class path resource [applicationContext-dao.xml]: Invocation of init method failed; nested exception is java.lang.NoSuchMethodError: org.springframework.util.ReflectionUtils.isEqualsMethod(Ljava/lang/reflect/Method;)Z
org.cipres.treebase.dao.admin.PersonDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.admin.PersonDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.admin.PersonDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.admin.UserDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.admin.UserDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.admin.UserDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.EnvironmentTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.EnvironmentTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.EnvironmentTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.ItemDefinitionDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.ItemDefinitionDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.ItemDefinitionDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.MatrixDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.MatrixDataTypeDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixDataTypeDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixDataTypeDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.MatrixElementDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixElementDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixElementDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.MatrixRowDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixRowDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.MatrixRowDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.matrix.RowSegmentDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.RowSegmentDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.matrix.RowSegmentDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
org.cipres.treebase.dao.study.AlgorithmDAOTest ► initializationError: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.study.AlgorithmDAOTest.xml#L0
Failed test found in: treebase-core/target/surefire-reports/TEST-org.cipres.treebase.dao.study.AlgorithmDAOTest.xml Error: java.lang.NoSuchMethodError: org.springframework.core.annotation.AnnotationUtils.findAnnotationDeclaringClass(Ljava/lang/Class;Ljava/lang/Class;)Ljava/lang/Class;
Build and Test treebase-core
Failed test were found and 'fail-on-error' option is set to true
Build and Test treebase-core
Process completed with exit code 1.