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Commits on Nov 28, 2022

• Merge pull request #44 from frobnitzem/hpc_pipeline

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  raqueldias

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• Updated database setup.

  frobnitzem

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Commits on Sep 26, 2022

• Added HPC scripts.

  frobnitzem

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• More testing epochs so model saves.

  frobnitzem

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• Fixed model_id string.

  frobnitzem

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Commits on May 27, 2022

• Merge pull request #43 from raqueldias/summit

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• updated model selection step (2) to work with the new summit pipeline version

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Commits on May 26, 2022

• Merge pull request #42 from frobnitzem/tile_test

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  raqueldias

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Commits on May 25, 2022

• Added tile_test.

  frobnitzem

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Commits on Apr 11, 2022

• Merge pull request #41 from raqueldias/summit

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• Merge branch 'summit' of github.com:raqueldias/Imputation_Autoencoder-1 into summit

  raqueldias

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• fixed nan_to_num requiremend for pytorch older than 1.8

  raqueldias

  committed
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• fixed nan_to_num requiremend for pytorch older than 1.8

  

  Raquel Dias

  committed
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• cleaning and scaling up

  

  Raquel Dias

  committed
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• fixed nan_to_num requiremend for pytorch older than 1.8

  

  Raquel Dias

  committed
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Commits on Apr 8, 2022

• Merge pull request #40 from raqueldias/summit

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• Included LSF version of job scripts for steps 1 and 2. Updated input.cfg to run with postgresql.

  

  Raquel Dias

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Commits on Apr 4, 2022

• Merge pull request #39 from TorkamaniLab/master

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  raqueldias

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• general plotting scripts for validation

  

  Raquel Dias

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• Merge pull request #38 from frobnitzem/postgresql

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Commits on Apr 1, 2022

• Added pgsql connector.

  frobnitzem

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Commits on Dec 15, 2021

• enabled search for all blocks in the chromosome

  raqueldias

  committed
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• Phased autoencoder (optuna)

  raqueldias

  committed
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• Phased autoencoder hyperparameter optimization pipeline (optuna) steps 0, 1, and 2

  raqueldias

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Commits on Nov 2, 2021

• Solving issue: Save runtime for continuous training #35

  raqueldias

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Commits on Nov 1, 2021

• solved issue: Save runtime for continuous training

  raqueldias

  committed
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• bug fix in the input example

  raqueldias

  committed
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• Update README.md

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Commits on Oct 22, 2021

• bug fix after seepup update

  raqueldias

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Commits on Oct 11, 2021

• Speeded up masking step (minor speed tweaks)

  

  RaquelDias

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Commits on Sep 23, 2021

• Remove duplicated directory

  raqueldias

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• GPU efficiency improved

  raqueldias

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• optional support for MAF thresholds in the output layer

  raqueldias

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Commits on Aug 27, 2021

• plot scripts added for validation

  raqueldias

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• multi-chromosome support added

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