.gitignore

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/manuscript/papers
.snakemake/
/Enard
Legacy.*
/OrthoMam/Compressed/
/OrthoMam/Datasets/
/OrthoMam/Experiments/
/OrthoMam/bayescode/
/OrthoMam/CODEML
/OrthoMam/trees.py
/OrthoMam/TableOmega.tsv
/OrthoMam/Experiments.tar.xz
/Polymorphism/CDS.ANNOT.tar.xz
/Polymorphism/*/Snakefile
/Polymorphism.Compress
/TSV
/Contrasts/scatterplot
/Contrasts/pickle
/Contrasts/polyDFE_*
/Contrasts/MK_*
/scripts/__pycache__/
/utils/
manuscript/*.md
utils.tar.xz
*.est-sfs.pvalues.txt
*.est-sfs.txt
*.est-sfs.usfs
*.errors.tsv
*.pk1.bz2
.idea/
*.dN
*.dS
*.t
*.ai
*.png
rst
rst1
rub
*.gz
*.bcf
*.run.xml
*.bed
*.toc
*.unmap
*.aux
*.log
*.synctex.gz
*.pdf
*.gtf_to_bed_errors.txt
*.out
*.bbl
*.blg
*.indd
*.svg
Thumbs.db
Thumbs.db:encryptable
data.zip
out/